XLOC_036611 (rh50)


Basic Information

Item Value
gene id XLOC_036611
gene name rh50
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 37259398 ~ 37263524 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071503
GTTTCAGTCAAAATGAAGAAGAATTCCACAAATTTGCGATTACGGCTCCCTGCTCTAATTTTTGCATCAGAGGTTGTGATTGTGGTCCTCTATGCTTGCTTTGTGACCTATGATGATCATGCTAATGCACTTCTACAAAACAACCAGACACGGCACATGGAGAATTCATTTTATCAAAACTATCCGTTTTTTGCTGACATTCAGGTGATGATATTTATTGGATTTGGCTGCCTTCTGGCCTTTTTCCGACGCTATGGCTTTGGTGGaatggtttttaattttttagttgcTACATTCACCATTCAGTGGGCAATTCTGATTCAAGGATTCTTTCAGTTTTTCTATGATGGGAAGATTCATCTTAGTGTGCTGAACCTGATTAATGCCGAGTTTGCTTGTGCTGTTGTGCTCATCTCATTTGGAGCCGTGTTGGGAAAGACGAGCCCTGTGCAACTCTTGATCATGGCCTTGCTCGAGATCCCTCTGTTTGGTGTCACAGAATGGGCTGTACTGAAATACCTGAGGATCAATGATGCTGGTGGCTCGATTCTTATCCACATTTTTGCCTGCTACTTTGGTCTGGGTGTCACATTTGTCCTGTATAGACCAAGCCTAAATGAAGGACACCCAAAGGTGTCCACAAGTTACCAATCAGATCTGTTATCTGTAATGGGAACCCTGTTCCTCTGGGTGTTTTGGCCATCTTTCAACTCAGCGCTGACCTTCAAGGGTGACGACCAGCACCGAGCCGTTCTGCACACATTTATAGGTCTCAGTGCCTCAACAATTACTGCTTTTGCCCTGTCCAGCATGCTAAGTAAGAATGGTAAGATCAGCATGGCTGATGTGCAGAATGTAACATTGGCTGGAGGTGTAACTGTCGGCGCCTCAGTGGACATGATGATTTCACCGGCTGCTGCTTACGTTCTGGGAGTCATGGGGTGCTTCGCGTGCATGCTGGGGTACAAATACCTAAGCCCAGTCCTGGCACAAAAGCTGCGAATACAGGATCAGTGTGGCATACATAACTTGCATGGACTAACCGGACTCATTTCCAGTCTTGCAGGAATCTGTGCCATCCTGCTGGCGACCGAGGAAACATACGGCCCCAGTCTTTATGAGACTTTCTCTCATCAAGCACCTCCTGAAGGAGACCCTCAGCTCATGGAGTTACAACAATTGATCCCGGATCTGGAAGCAGGCTTGGGCAGAAGTGCAAAGGAACAGGCCCTCTTTCAGGTGGCTGCACTGTTCGGGACCATTGCCGTGTCTGCAGTAGGGGGGATGCTGACTGGTGTAGTTCTCAAGCTACCATTTTTGGCTTCACCCTCAGATGAGCAATGCTTTGATGATGAGGTCTTCTTTACTGTTCCTTCAGATTACGACTGTGTAAATGTTCTCAGTGAAACAAGGAAAGCTgagaatgaatgaagaaagaTAAAAGACTACAGCTTAGTAGGAGCATCAAATAAAGGAATATCAATGCTGGACAATAGGCTAAACAACATTATGAGTACTCTAACTCTGCTTGGTGATTGTACTTACAAAATAAGATTATTTCAATGTTTGCTATCAAAGTATAAACTGTACCATACATTTGATTTTCATACatatttgttaaattaatattttttgatcTAATGTTTTTCTATATTCTGTCTATagttaatgattcatttattattttgtgaaCTTTTTTATTTGGAATTAAGAGaacatgtattttaaattaaaatgtaaaatctgtgT

Function

symbol description
rh50 Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium transmembrane transport. Predicted to act upstream of or within ammonium transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015696 ammonium transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000427-1 Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium transmembrane transport. Predicted to act upstream of or within ammonium transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000041848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071503 True 1749 mRNA 0.43 2 37259398 37263524

Neighbor

gene id symbol gene type direction distance location
XLOC_036610 rbm39b coding downstream 9407 37228611 ~ 37249991 (-)
XLOC_036609 zgc:162200 coding downstream 154172 37058899 ~ 37105226 (-)
XLOC_036608 si:ch211-218o21.4 coding downstream 202776 37046010 ~ 37056622 (-)
XLOC_036607 renbp coding downstream 215498 37030974 ~ 37043900 (-)
XLOC_036606 NA coding downstream 281392 36976998 ~ 36978006 (-)
XLOC_036612 slc12a5b coding upstream 17008 37280532 ~ 37391372 (-)
XLOC_036613 eif2d coding upstream 184082 37447606 ~ 37461835 (-)
XLOC_036614 NA coding upstream 702624 37966148 ~ 37966860 (-)
XLOC_036615 rab11fip1a coding upstream 734863 37998387 ~ 38022298 (-)
XLOC_036616 adgra2 coding upstream 763159 38026683 ~ 38159805 (-)
XLOC_036604 NA non-coding downstream 276237 36732916 ~ 36983161 (-)
XLOC_036605 NA non-coding downstream 460693 36794501 ~ 36798705 (-)
XLOC_036601 CU694380.2 non-coding downstream 717542 36528233 ~ 36541856 (-)
XLOC_036590 NA non-coding downstream 1478711 35766632 ~ 35780687 (-)
XLOC_036622 NA non-coding upstream 1322529 38586053 ~ 38587434 (-)
XLOC_036624 CR628410.1 non-coding upstream 1360631 38624155 ~ 38631651 (-)
XLOC_036626 CR392001.2 non-coding upstream 1674766 38938290 ~ 38938960 (-)
XLOC_036628 NA non-coding upstream 1868275 39131799 ~ 39132638 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_01854579_01858322 RHAG-2, RH50 coding CI01000146 null 1854112 ~ 1858376 (+)