XLOC_036615 (rab11fip1a)


Basic Information

Item Value
gene id XLOC_036615
gene name rab11fip1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 37998387 ~ 38022298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071509
ACACAGTAGCTTTGAACGACGCCGGACACACGGCAAACATCAAGCAGGGACGTACTTACAAAGAGCAATTTTAGTCCCGTTTGAACTTGTATTTAAACATGTCTTTGGGTGACCAGCAGTGGTATCCCACCAGCGTTCAGGTAACCGTGCTCAAAGCACGAAACTTACGTATCAAGGGCAAAAATGGAACGAACGACGCCTATGCCATCATGCAGGTGGGCAAGGACAAGTTTTCCACCTCGGTAGCGGAGAAATGCGTCTCACCGGAATGGAAGGAGGAAGCGACGTTCGACTTGCCGCTGGTACATCAGGGGGACGTGGAACGATGCACGCTGTACATCATCGCCATGCACCGTGCCCTGGTGGGGCTAGACAAGTTTTTGGGGCAGGCTGTCATCAATTTAGTGGACCTCCACGCCAACAGATCACGCAAGAAAACCGACTGGTACAAGCTGGTGGATAAGCATGGGAAGCAAGAGAAGGACCGTGGGGAAGTTATGCTGGACATTCAGTTCATGAGGAATAACATGACAGCCAGCATGTTTGACCTCTCCATGACAGAGAAGCCTCGCTCTGGAATCGCTAAGCTCAAGGATAAAATTCGTGGAAAGAAGAAAGACGGCCTGTCAGATTCTGCTTCTGCGATTGTGCCCTCATCAATGGAAACAGACAGCGAAGGAGAAGGAGAGGGCAGTTCAGACTCTCCAAAGAAGAAATCAAAGCTGAAATCCCTGTTTGGGCCAAAAACTAACCTCCAAAGGAATGTGTCTCAGTCCATGTCAACCCTCGGCACCCTACCTGAGAAGAACAGTTCACTTAGCAGCAGCAGATCATCAGGCCTTAATGTGGATTCTCCTGAtgTGAAAAAGAAGTTTAAAATTCTGGGACACAAGCGCACTGACAGCTCGGATAGCAAAGTGTCACTTGGCCCTTTTTCTCTTCTGAGTCGCTCTAAACAGAACATCCAGGAGCAGAATAACCTCTGTATCAACGGCAGCCATGTTTATGCAGAGGATCAAGAACCCAAAGCCAGCTTTGGCTCCACGCTCAGCCTGAACAGCTCCGGAAAGGGTTCGGCAGAGGATGTTCGTAAATTCCATCAACGGAATATTTCTGACGTCTCCATCGACTCATTTAAAGGCCTAAGTATTCCCTCGTACAAGCCTGAAGTGCAAGACAAAACTGTCCCACAGCGCCCTCTGGAGGACAAAAACTCGCAACCTGTGAAGGTgctggaggaggagaaggaaAAGAAACCCGAAGGAAGAAGCCTTCAAGAGATGCTGGACCGGCAGGAGGAGCAAGAGCAATGGAGGCAGCAGGAACGAGAGAGGAAGCAGGAGGAAGAGAGGAAAGAACAAGAGAGGAAGCGCAGAGAAGAAGAAGAGCTGCAGAGGAAGAGACGTGAAGAGGAGACTCAGCATGCCGAGGAGCAGCGGCACCAGGAGGAGAGCAGAGTAACTGAG

Function

symbol description
rab11fip1a Predicted to be involved in regulated exocytosis. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human RAB11FIP1 (RAB11 family interacting protein 1).

GO:

id name namespace
GO:0045055 regulated exocytosis biological_process
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-116 Predicted to be involved in regulated exocytosis. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human RAB11FIP1 (RAB11 family interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000046124

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071509 True 1466 mRNA 0.50 3 37998387 38022298

Neighbor

gene id symbol gene type direction distance location
XLOC_036614 NA coding downstream 31527 37966148 ~ 37966860 (-)
XLOC_036613 eif2d coding downstream 536552 37447606 ~ 37461835 (-)
XLOC_036612 slc12a5b coding downstream 607015 37280532 ~ 37391372 (-)
XLOC_036611 rh50 coding downstream 734863 37259398 ~ 37263524 (-)
XLOC_036610 rbm39b coding downstream 748396 37228611 ~ 37249991 (-)
XLOC_036616 adgra2 coding upstream 4385 38026683 ~ 38159805 (-)
XLOC_036617 pdlim2 coding upstream 167935 38190233 ~ 38317914 (-)
XLOC_036618 sorbs3 coding upstream 296059 38318357 ~ 38403018 (-)
XLOC_036619 sorbs3 coding upstream 382818 38405116 ~ 38406868 (-)
XLOC_036620 inpp5l coding upstream 399035 38421333 ~ 38477817 (-)
XLOC_036604 NA non-coding downstream 1015226 36732916 ~ 36983161 (-)
XLOC_036606 NA non-coding downstream 1020381 36976998 ~ 36978006 (-)
XLOC_036605 NA non-coding downstream 1199682 36794501 ~ 36798705 (-)
XLOC_036601 CU694380.2 non-coding downstream 1456531 36528233 ~ 36541856 (-)
XLOC_036622 NA non-coding upstream 563755 38586053 ~ 38587434 (-)
XLOC_036624 CR628410.1 non-coding upstream 601857 38624155 ~ 38631651 (-)
XLOC_036626 CR392001.2 non-coding upstream 915992 38938290 ~ 38938960 (-)
XLOC_036628 NA non-coding upstream 1109501 39131799 ~ 39132638 (-)
XLOC_036629 NA non-coding upstream 1252904 39275202 ~ 39292674 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000146_01393005_01411381 RAB11FIP1A, RAB11FIP1 coding CI01000146 null 1392679 ~ 1411480 (+)