RNA id: TCONS_00071485


Basic Information

Item Value
RNA id TCONS_00071485
length 3743
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_036602
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36541949 ~ 36554732 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATAACTTCCGGTAGCAAAGAAAAGCGGTATTGTGGGAAATGCAGTTCAATAGTAATGGCTTCACGCAGCCATGGAAACCTGCTGTAAATAGAGGCTGTGCACATGATCTTGCAAAAAAAGACttaatttattaaagattaaaccagtttttggtttgtttagcaATGAGCCATCTGTTAGGTCGCCAGGACTGCATCGACAGCCTTCGGAGAGATCTTATTGACTTACAGGGAGCTCTTCTGGATGTTTTCTCTAAGACTGGACCTGTCCGTTTCCCATCATGGAAGTTTCCTGATAAACTATCATGTAACCTGGACTTGGTCAGACTTTTGGAAGAATATGATTATGTGGAGGACGATGAAGAGTTCAGCCAGCACTCCCACATAGTCCTGCAAGAGTTGCTGATTGACAGATTGATGCTTCTACTTCAGAGTTTTAACGTTCATGCTGAGCTCTTACTTGAAAAGCAGCAAACTCTATCACTTGATCCAAATGAAACCTCAGTTTCCATTGGTCCTGTGGTCAAACGCTACTGGAAAAACCTGCTTCAGCTAAACAGTCAACAAAAACAAGAGAGCTCCTGCAGTGGAAATCAACCTCCATCACAACAAAGTCCATCCGTTAGCAAAACAGCACCAAACACTCCAACTACACTTAAAACACAGAGCGCCTCTATGAGCAGCATCCATAAAACGTCCTCAAGTAGTCCAGCTTTCACTCTTCAACATGGCTCCTGTGTCTCGACCCACTCTGTGAGCTGTCAGACAGTAGAGTCGGCCCTGGTGCCCTGTGAGGCCTGTGCTTGTGTGCAGGCTGTGCTGAAGGAGAACAGTGATGCTGTAGTGTCTCTGTGCCAGTCTCTGGGTTTGCCATGCTCCATGCAGGGCTTTCTGGAAGCGGTTGAGGAAACGCAGCAGCTGGGCCGCTTGTCTGCATGTGACATTTCCCAATGGGCAAGTGAGCAGCGTAGGGATATGAGCCGTGTGGGGAAACATGTCCTGGAGGTTAGGGAAACTGTTGAGCCACTAAAAAGGAAAGTGAAAGAGACAGAGATGGAGCGAGAGAAGCTGAGGAAACAGCTATCAGAGACGGTGAATAGAGAGAAGGAGGAGAGGAGGAAGATGGACGAGCAGTGGGAGCGCAAAATGCAGGAGGTGAAGGTCAAGAGTGAGGATGCAGTGAGGAGATTAAAGCAGGAGCAGGAGGAGTTAAAGAGAGGTTTGACATTGTTGGAAGACAGAAATTCTGAGCTGACAGTAGAATTAAAATTGCAGACAGAGGCGAAGCACAGTCTTGAATTTGAGAGGAATGGACTACAGGAGGAAGTCCATCGTCTACATTCATTTGAAACCATGTTAAAAGAGGTTGAGGAGAGCAGGCAAAACCTGGAGAAGGAGCTCAGATCTACACAGACACTGCTGGACAAAGAGAGAGGCAGGAATCACAGTGTGCAGCACCAACATGAGGCACTTCAGGTGAAACAGACAGCTCTGCGGAAACATCTGGATGTGCTGGTTCAGCAGACTGAAGAACTCCACAGCAGTCTGGAAGAATGTGAGGATGAAAAAGCTGATCTTGGCAACAAACTCAAGCAGATCATGCGAGAAAAAGACACACTTCAGGAGCAACTCACTCACCAACAATCCCAGAATAGTTCACTGTGTACTGAGATAGAGAGCCAGCAGACACAGATCACAGAACTGGAGGAAAGAGTGTCTCGTCTGGAAGGGATGTTAGAAGAAGCTGTTCAGCGAGAGAGACTACTGGTGGCCTTTCCTGAGCTCAGTCCACAAGCAGCACCACagaCTACAGGTGATGTGGTGTGTGATATGGAGCACCAGCTGAAGGCAAACTTAGTGAGGATCAGGGTTCTTCAAAAGGAGAACTCTTCTTTGAGCAACAGTCTCGTCAGACTAAAGGAAAGAGAGGAAAATCAAAAGGCTTCAGACTCTGGGATATCAGAGATGGACTTGAGGATGGAGGCTCAAGTGATGGAACCCCAGGACAACTCGGGTGCCTCTTCTGTCATATCCTCTCCCACCTCTTCTTCATCTGTTCTTCATCATCAGACTCTCTGCCTTTCTCTCCATCAAGATGTAGAAGAAAGATACAAGAACATTCGTCAGGCAGCTCGCATCCGCTCTGCTGGCACATGTCGCAGACCGAAGTGATATCACTGGTTATTGGTCTGGAGATTGAGTTGGCATGAGTTGCTCATTTGTATATACATGTGACATGAGTACATAAATGAATAGAAGTAGTTCTTCAAATCTAGCTGTTCTACAGTTTAAAACTATCAATTAATGTTTCAGGTCAAAATTATGGTAAAAGAAGACTAGGGACAGTATGTGAGGACTGTACTTAAATTATTCAGGCTTTTCTTTAGttcttttgtttgtctgtctgtttaaaaaagtaaactgATTCCATTTTTCACGTTGTCTCTTTTATGACTGAAAATCAGACTGTTAGTGAGCCTTGAACTGTACGTCAAAACGAAAGTTAAAAACCCTTTGATCTTTACGTCATTACCTACGTCATGAATTGGTTCCCGCTCTTTTTCGTTTGAATGTTGTACCAATAGCAGGGATTGTTTTAAAGCGACGGGTTTCAGTTTGGAGGTAAGGGTGCAGCTTCTTTGCATTCCCCGATGTGATAAAAAAGTGTAGTTCATGAAGAACGAAGCTATATTATGAGTCATCACTGTCAAGTTTGTGGCTGACGGGACCGTGCGCTTCTCTCTTTAACGTTAGCTCGAAATCTTTCAAATGAACAGTAACGTTACACTTACCGTAGTGAGTGGATTCTGCTGTACGCGTGAGTATACTAGAATGTGAATATTTTCCTGTTACTCCACACCAAAACAATGTGCATCCGCACAAGGAAGTAGATTTGCTTTTAACTTGTGGggactgatttattttactttgaggTGGAATGAATGCATGCTGCTGCAAAGGAAGCGAATGATGCAAGTAGAGAACGTGATTTAACCCTTTAATTACGTTAATGAGAGCTGACAGCATTATCTTATTTTTGTACTCGATTCAATTATTAGTGATGACATTTCGATAAGGGTGGTGGGAgggcattttaataataaaaatataattaaaataattaaaacataataataatgtagagctttgaaaatgttttagcCTCACttgcaaaaaaagtaaatttgtaaatatatgtatAGCAACAATAGCCTGATtagtattaaaataaactttaatatgggctgcttttttattggtcattttttgtttcgTGGTTAAGGTCCAAAATTTAGATTAAAATCACTTGTAAAacgttttctctatttaacaacaatacagcAGGTCAGCAGTGAAAGGTTATTTTACTCTCCttatattgtatgtttttttgcacagctggatgttggactcatgaaaacgAATTATTTGCATTGGCCAAAATTAGCTAAAATTAGCAAAGATTAGCTAAGTCATGACAGCCAACAGAAAATTCAACTTAGTCAAAACCTGCTTTGAAATAGgataaatgagctcatgtatgggacaaattctggacctttgtcagtaggtgggtgggtctttcgaaccacccaaacccccctggCTACTGGCCTGTTACCACTTAACAGTTAATACCACTTAATATTGCGACATGGATGCTTGTGCCACTGAGACTAATGCAATTATTAAggtaattattaaatttattaaaatagttattGTGGGAGGTTAAGcagt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-155 Orthologous to human CCDC157 (coiled-coil domain containing 157).

Ensembl:

ensembl_id ENSDART00000078746

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071483 lncRNA downstream 93 36528233 ~ 36541856 (-) False XLOC_036601
TCONS_00071484 lncRNA downstream 467 36533560 ~ 36541482 (-) True XLOC_036601
TCONS_00072496 lncRNA downstream 761262 35766632 ~ 35780687 (-) True XLOC_036590
TCONS_00072495 lncRNA downstream 949441 35579388 ~ 35592508 (-) True XLOC_036588
TCONS_00072494 lncRNA downstream 950104 35579388 ~ 35591845 (-) False XLOC_036588
TCONS_00072497 lncRNA upstream 178184 36732916 ~ 36968730 (-) False XLOC_036604
TCONS_00072498 lncRNA upstream 239769 36794501 ~ 36798705 (-) True XLOC_036605
TCONS_00072499 lncRNA upstream 260386 36815118 ~ 36959996 (-) False XLOC_036604
TCONS_00072500 lncRNA upstream 316465 36871197 ~ 36983161 (-) False XLOC_036604
TCONS_00072501 lncRNA upstream 318352 36873084 ~ 36983161 (-) False XLOC_036604
TCONS_00071482 mRNA downstream 66621 36472444 ~ 36475328 (-) True XLOC_036600
TCONS_00071481 mRNA downstream 72832 36466771 ~ 36469117 (-) True XLOC_036599
TCONS_00071479 mRNA downstream 129013 36397818 ~ 36412936 (-) False XLOC_036598
TCONS_00071480 mRNA downstream 142065 36398903 ~ 36399884 (-) True XLOC_036598
TCONS_00071478 mRNA downstream 154562 36377925 ~ 36387387 (-) True XLOC_036597
TCONS_00071487 mRNA upstream 37059 36591791 ~ 36618073 (-) True XLOC_036603
TCONS_00071490 mRNA upstream 476242 37030974 ~ 37043900 (-) True XLOC_036607
TCONS_00071491 mRNA upstream 491278 37046010 ~ 37056622 (-) False XLOC_036608
TCONS_00071492 mRNA upstream 492257 37046989 ~ 37056211 (-) True XLOC_036608
TCONS_00071493 mRNA upstream 504167 37058899 ~ 37101581 (-) False XLOC_036609
TCONS_00071467 other downstream 1165592 35376243 ~ 35376357 (-) True XLOC_036587
TCONS_00071453 other downstream 2617438 33906377 ~ 33924511 (-) False XLOC_036577
TCONS_00071452 other downstream 2623372 33906377 ~ 33918577 (-) False XLOC_036577
TCONS_00071451 other downstream 2628968 33906377 ~ 33912981 (-) False XLOC_036577
TCONS_00071450 other downstream 2631882 33906377 ~ 33910067 (-) False XLOC_036577
TCONS_00071488 other upstream 260338 36815070 ~ 36815222 (-) False XLOC_036604
TCONS_00071489 other upstream 338901 36893633 ~ 36968730 (-) True XLOC_036604
TCONS_00071508 other upstream 901783 37456515 ~ 37457198 (-) True XLOC_036613
TCONS_00071526 other upstream 2069423 38624155 ~ 38631651 (-) True XLOC_036624
TCONS_00071541 other upstream 3285565 39840297 ~ 39847614 (-) False XLOC_036638

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000146_02220692_02227621.mRNA True 2529 mRNA 0.45 9 CI01000146 2220692 ~ 2228362 (+)