XLOC_036598 (si:zfos-2070c2.3)


Basic Information

Item Value
gene id XLOC_036598
gene name si:zfos-2070c2.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 36397818 ~ 36412936 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071479
tgacagaagaaaaaaagatgcTGCCTAGCAACACTTGACACTTGATACCTGCAATGACTGGTTTTCCAGTTATCTTAGAATTCCATCTTATGCACATGAGAATAAAACACCTAGCAGCATTCTGGGGTTCAGTATAAAAGAAAATGTCTCTAATAAAACTATCATGCTGTCCTCCTATATTGGCACTATTTGTACTGATTGGAGCCGAAAATGCTAATGAATATTACGCAACCGAGTTGTCAAGATGCATCTACACCTCTCATGATCTAAGTGATATGGTGTTTATTGACAACtactattttaataaacatcTAGTCACACAGTTCAACAGCACTCTGGGGAAATTTGTAGGGTTTACGGAGTATGGAATAAAAAATGCAGAAATCTGGAACAATAGTTCCTTGCTGCAAAAAGAGATATCTAATGTTGATTCTGAATGCAGATTTTACATTAAAACCAGAGACAAAGCCGTCCGTGATAAAGCAGTGAAGCCAACAGTTGTGCTCAGTTCAGTAACACAGGCGAATGGAAGACATCCAGCTATGTTAATCTGCAGTGCGTATGAATTTTATCCTCGACACATCAAAGTGTCCTGGCTAAAAGGCGGTAAATCGGTGACCTCTGAAGTGACCTCCACTATGGAGATGGCTGATGGTGACTGGTATTACCAGATCCACTCTGAGCTGGAGTACACACCCGGACCTGGAGAGAAGATCTCCTGTTTGGTTGAGCACGCCAGCTCCAGTGAACCCATGATTTATGACTGGGATCCATCTCTTCCTGAATCTGAGAGGAATAAAATCGCTGTTGGGGCATCTGGTTTGGTGATGGGATTCATAATAGCGGCTGTTGGAATCTTATACTACAGAAAAAAATCAACAGGAATGATTCCCATACCTCATTAAGTGTGTTCATGTCCTGCTGAGAAGtttgtatatatgtttatatgtatacTTTGGTTTGGGGCAAGATGCTGATGTATCTTCTACAAAATGATGAATGCCTATCTTTAAGGAATgcctaaatttaattaatatatactgATTTTTTATCAGGACAGACACTGCATCCACTGGATCTATGGACGTGTTTCATCAGACATAACTCAAACTGACTAATATTTACAACTTTCATAGAACttgtaaatacaaatatttcaaaatgaataTTTCTGCACATGACTTAATTTTATCACCTGTTATTAGATTATTCCTAATTTAGTATTTTTGTGTAATTATAACCTTCTGTTTTAGTTGCTATTGTTACATTATTATCTATATTTAACAGTTATTTTTAATCCTTGTCCTGGGTACAAGTCCCTTTACACATTTTGCATTTTCCATTAAGAAACCTTATTCAAATGACCAGACTATTAGACAAGGATTACATGAACTCAGCTCagtataatagaataaaataaataaataaataaataaaattaaattaaattttcacacatttaaaatgtgtgagcTGGTGCATCCTCAGAATCAGGTCtgaaaaccactgatgtttatgttcCTGTGTTTTCTCATTAGTCTAAAGTTCCCTGTTTTTGTTAATAAAGAACAACCAACTGTATCTCTTGGTAAAGATGTTATTAAGGAGAAATATTAGATTACTGGTCTTCCCAACTGTTGCAATGttgtattaaaaatatgtatatatttttgttctcACACTGTTCTCCTGAAAGCCattctttaaaaacataaaatgtaataataatataggtTAAACATTATTTCCTAATGTTTTATTATCATTCTTTTGTGAAAACATTGTAATCTTAATACATTGTCTAATAaatatcttattatttatttttttgtatttgttaagAGGAATTATGTCATTTTTTGTCATATGTTGTAACAAAGTAGCTTTCATTTGGGGCTTCAAAAGAATCCACTCTTTCAAGAgtactttcacatctgtagttcggtttatttggtccggaccaagggcaataaatgatacattgttgcatttttttctgtctttgggtcgttttcacaccacactgctggctttggtccgaatcagttgaaaagaaccaaaatgcagtcatctgactaAATCCACATCtttcattggccagatgttgttgaacatagtttctataaactgcttatcgattggtcagaattcatgtgcgggaaaatgccaatgaactcccgcaagtaaacaaacccgcagacacaaaatgttgctttttacttTGGAGGA
>TCONS_00071480
CCTGATGAAAATTTAGAATTCCAACTTTTTAACTATTGATTCAATGATAATTCACGTTCTGCTATCTGGCTACTACAATTGCTGCTTTCCATTCTGTACAATAACATGAGACATACATTGATTCAGAAACTAATTATGCATTTGTTATATTGCTCTTCTTAATTCAGTGAAGCCAACAGTTGTGCTCAGTTCAGTAACACAGGCGAATGGAAGACATCCAGCTATGTTAATCTGCAGTGCGTATGAATTTTATCCTCGACACATCAAAGTGTCCTGGCTAAAAGGCGGTAAATCGGTGACCTCTGAAGTGACCTCCACTATGGAGATGGCTGATGGTGACTGGTATTACCAGATCCACTCTGAGCTGGAGTACACACCCGGACCTGGAGAGAAGATCTCCTGTTTGGTTGAGCACGCCAGCTCCAGTGAACCCATGATTTATGACTGGGATCCATCTCTTCCTGAATCTGAGAGGAATAAAATCGCTGTTGGGGCATCTGGTTTGGTGATGGGATTCATAATAGCGGCTGTTGGAATCTTATACTACAGAAAAAAATCAACAGGAATGATTCCCATACCTCATTAAGTGTGTTCATGTCCTGCTGAGAAGtttgtatatatgtttatatgtatacTTTGGTTTGGGGCAAGATGCTGATGTATCTTCTACAAAATGATGAATGCCTATCTTTAAGGAATgcctaaatttaattaatatatactgATTTTTTATCAGGACAGACACTGCATCCACTGGATCTATGGACGTGTTTCATCAGACATAACTCAAACTGACTAATATTTACAACTTTCATAGAACttgta

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-413 Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within antigen processing and presentation and immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); bacterial infectious disease (multiple); eye disease (multiple); hematologic cancer (multiple); and lung disease (multiple). Orthologous to several human genes including HLA-DPB1 (major histocompatibility complex, class II, DP beta 1); HLA-DQB2 (major histocompatibility complex, class II, DQ beta 2); and HLA-DRB5 (major histocompatibility complex, class II, DR beta 5).

Ensembl:

ensembl_id ENSDARG00000076307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071479 False 2229 mRNA 0.35 5 36397818 36412936
TCONS_00071480 True 825 mRNA 0.39 3 36398903 36399884

Neighbor

gene id symbol gene type direction distance location
XLOC_036597 si:zfos-2070c2.1 coding downstream 10431 36377006 ~ 36387387 (-)
XLOC_036596 mhc2bl coding downstream 27223 36362898 ~ 36370595 (-)
XLOC_036595 zgc:103700 coding downstream 70490 36321336 ~ 36327328 (-)
XLOC_036594 si:busm1-194e12.11 coding downstream 110772 36283548 ~ 36287046 (-)
XLOC_036593 CT583723.2 coding downstream 257413 36128477 ~ 36140405 (-)
XLOC_036599 mhc2dab coding upstream 53835 36466771 ~ 36469117 (-)
XLOC_036600 mhc2a coding upstream 59508 36472444 ~ 36475328 (-)
XLOC_036601 CU694380.2 coding upstream 115297 36528233 ~ 36541856 (-)
XLOC_036602 ccdc157 coding upstream 129013 36541949 ~ 36554732 (-)
XLOC_036603 gpkow coding upstream 178855 36591791 ~ 36618073 (-)
XLOC_036590 NA non-coding downstream 617131 35766632 ~ 35780687 (-)
XLOC_036588 NA non-coding downstream 805310 35579388 ~ 35592508 (-)
XLOC_036587 BX322651.1 non-coding downstream 1021461 35376243 ~ 35376357 (-)
XLOC_036584 BX005399.13 non-coding downstream 1935427 34461160 ~ 34462391 (-)
XLOC_036582 BX511073.1 non-coding downstream 2065242 34271072 ~ 34332576 (-)
XLOC_036604 NA non-coding upstream 319980 36732916 ~ 36983161 (-)
XLOC_036605 NA non-coding upstream 381565 36794501 ~ 36798705 (-)
XLOC_036606 NA non-coding upstream 564062 36976998 ~ 36978006 (-)
XLOC_036614 NA non-coding upstream 1553212 37966148 ~ 37966860 (-)

Expression


Co-expression Network