RNA id: XM_039787346.1


Basic Information

Item Value
RNA id XM_039787346.1
length 3044
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120550679
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 13225526 ~ 13331422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGCGATAACGCGAGATAACTAAATCGCACGCTTTCTCCTCTTTTTGTGAGTCAAATGCACATTGGCTCGGACAGGGGAAAGTAACGAGCTAATACCGACCCTTCCCTCAAACATAACCATTAATTGTTTTTCTGGGTTGCATGCTGTTGACCAATTTcttcatcatcgtcatcatcatctgtGGTGAAGGAAGCTGCAACCTACTCTTTCCCAGCAGTGAGCTGTGGCTTCCCAGGCTCCGCAGCGTCAACAACACAGCCCGTTACTGATTAAACTAAATATCTGACGGAGAGCCAAACATGTCGACAGGGAGGAAAACAGCGTTAAGTGAAAACACACTCTTTGGGATGGGAAATCCCTTGCTcgacatttcagctgttgtggaCAAAGACTTCCTTGACAAgtttGGACTGAAGCTTAATGACCAGATCCTCgctgaagaaaaacacaaagtcttGTTTGAAGAAATTGTCAAGAGGAACAAAGTTGAATATCATGCCGGTGGTTCGACCCAGAACTCTGTGAAAATTGCTCAGTGGATGATCCAGAAACCCCACAAGGTGGCTACTTTCTTCGGGTGCATCGGTACCGACCACTTCGGGGAGATCCTGAAGAAGAAGGCCGAAGAAGCCCACGTCGACGCACATTACTACGAACAAAACGAGGAGCCGACCGGGACCTGTGCCGCCTGTATCACCGGAGACAATAGGTCCCTTGTTGCTAACCTGGCAGCGGCAAACTGctacaaaaaggaaaaacaccTGGACTTGGACAGCAACTGGGAGCTGGTGAAGAAAGCCAAGGTCTATTATATTGCGGGTTTTTTCCTGACTGTGTCCCCCGAGTCCATCCTGAAGGTGGCGAAGCACGCTTCAGATAACAACAAAATCTTCTGCATGAACCTCTCGGCACCTTTCATCAGCCAGTTCTTTAAAGAGCCCTTGATGAAGGTCATGCCTTACGTCGACATCTTGTTTGGCAACGAGACGgagGCGGCCACATTTGCCAAAGAGCTGGGCTTTGAGACAGATGACATTGCAGAGATTGCAAAGAAGACCCAAAACCTCCCCAAGGAGAATAAGAAGCGGCAGCGAGTAGTGGTCTTCACCCAGGGCAAGGATGACACTGTTGCAACTGTTGGTGAGAAGGTGACCATGTTTCCTGTTTTGGACATCGACCAAAACAATATTGTGGACACTAACGGAGCTGGAGACGCCTTTGTGGGAGGATTCCTCTATGCGTTGGTCCAAGAGCAAGACTTGGAGGAGTGTATCCGGGCTGGACACTATGCCGCCAATGTCATCATCAGACGGGTCGGATGCACTTTCCCAGAGAAGCCAGACTTTCACTGATGCATCCAAGCACTGCACCTTTGTCTTTTCCACAAGATACTTGTATATGTATGCTTCAAGAttttatgtacatttttttctatttacagTGACTGCATGGGACTAAGTGCTGCAGCTTGAATATTTGATCAAGCTCAAATATGAAACTCAGATGTTTAAATGCAATACAAACAATGTACTAGAATCAAATATTGGAATAAAATGGTAATGTTTAAAGAAGCATTCCACTGAAAATTTATATTTTGAGTATCAAAAACTAAACGCCTGTAGGTCTAAAAGGTGTCCAAATGTATCATCACGTTAGTAGAACACTTTTCACACCACTTTTCCACCATTTATCTGTATGTTCTTTATGTTACAAACACTCAGGATCTCCACAACAGAGCTACTCACTCCCAGTGTCCTAGCACCACCTCCTTATAGCTCTGAAGCTTTGCTGGAAgtagtgtatttatttattattcgcAAAGCGACAAACGTTTGGTTCATACTGAAGAAATGGATCAGTGGTAGAGAAGTGCATTATCCTGCAGGATAGGTTTGGACATTTTTTATGGACATGTTGCTCTAAAAAGTTTGTTGTTTGCTCCTTAATGAAGGACGGCAGCTGTAGTCGGCTTCGATTCACAGAAGTTACAAGCAGTTCTAATGGTGATCCAGAGTCAcggccaaaaaacaaaaacgttcATAGAAACTTCCTGCTGCATAATCCACTTATCCGCTGTTGATCCTCATACTGAATATTTTCCAAACTATTTTGCCAATAATTTGCTAATTACACTCCCTGCTTCTATTGGATCTTCTGAGCTATGAGCAGGCAATAGTGTGCCACAGAAGTGCTGTATTTAGTAGTGCAAACTGAGTGTTGTTATGAAGCAGAAAACTACAAACTTTTTCAAGCCTGCAGGGGTTGAGTGTTGTCATACTACATACTTTAAAATATAGTAAATTTTCAGTTGAGTATTTCTTTAATATTCAGCTGTCATGCAATTTATGGATGGGGCGCCATTATAGGTGGCTTACCATTTCCAAAAGTGACAGTTGTAACTGTACAAAACTGCAAAGAGTATCTTCtgttatacaaataaaaaagtcattctACCAAGATACTCCTATACAAAAACAAAGTTAGTTTCGATGTATAAGCAGTTTACCAGCAGTTGACGTTTCTTTAAATACACCCAAAAACAAACCGCAACAACAACAGGATTTGTGCATTTCCCCATTATTTAATCAGCCAGAGGCTCCCTCATGCTAATCACTTTTGGACAGCTCAACACTCTCCATTATAGAGGGaactggggggtggggggaccGGGACCAGCCTGGTGTCCTGCTCTGTTCACCCCCACTCATGCATGTTGGGTCCTAACTGGACTCTCGGGGTCTGGCGCTGCACTGCAGGGCTACAGGAGATCATTTTTCTCAGTTAAGGGATTAGTGGTTGCTCTTCATGGCGATCATTTGGGGGACCTGAAAATTAGGCTGATCCTTCGTACCCAGCTGTGCTGTCGCTGGGGGTTTGAGACAAGGATCAGAGGGAGGCCCCTCCCCTCCCACTGACTGTGGGCCAGCAAAAGTGTTGGGCAGTGTCTCAAGTGTTGTGGAAAATAATTCAACACTCATCTGTTCTAGAAAGAAGTGTGATTGAGAATGGttggagaataaaaaaaatgttgttcccCTAGAA

Function

GO:

id name namespace
GO:0006166 purine ribonucleoside salvage biological_process
GO:0006167 AMP biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004001 adenosine kinase activity molecular_function

KEGG:

id description
K00856 E2.7.1.20, ADK; adenosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287392 lncRNA downstream 59135 13165419 ~ 13166391 (-) True G212040
XR_005637763.1 lncRNA downstream 60751 13069082 ~ 13164775 (-) True LOC120550687
TU287479 lncRNA upstream 44905 13376306 ~ 13376749 (-) True G212106
TU287572 lncRNA upstream 78568 13409969 ~ 13442770 (-) True G212140
TU287580 lncRNA upstream 219592 13550993 ~ 13554164 (-) True G212144
TU287579 lncRNA upstream 286428 13617829 ~ 13671904 (-) True G212143
TU287601 lncRNA upstream 397093 13728494 ~ 13730144 (-) True G212162
XM_039787338.1 mRNA downstream 1823 13199424 ~ 13223703 (-) True kat6b
XM_039787337.1 mRNA downstream 3209 13199424 ~ 13222317 (-) False kat6b
XM_039787341.1 mRNA downstream 3217 13199424 ~ 13222309 (-) False kat6b
XM_039787340.1 mRNA downstream 3470 13199424 ~ 13222056 (-) False kat6b
XM_039787345.1 mRNA downstream 43175 13172210 ~ 13182351 (-) False LOC120550678
XM_039788420.1 mRNA upstream 1930 13333331 ~ 13362001 (-) False LOC120551192
XM_039788419.1 mRNA upstream 1930 13333331 ~ 13362001 (-) True LOC120551192
XM_039788996.1 mRNA upstream 50574 13381975 ~ 13387516 (-) False dcakd
XM_039788997.1 mRNA upstream 51995 13383396 ~ 13387516 (-) True dcakd
XM_039788995.1 mRNA upstream 56224 13387625 ~ 13392045 (-) True pus3
TU286738 other downstream 2225673 10996320 ~ 10999853 (-) False nrxn1a
XR_005637842.1 other downstream 2333539 10865095 ~ 10891987 (-) False mta3
unassigned_transcript_1165 other downstream 2368691 10856742 ~ 10856835 (-) True trnai-uau_4
unassigned_transcript_1163 other downstream 2882928 10342517 ~ 10342598 (-) True trnal-uag_19
TU286556 other downstream 2896118 10326667 ~ 10329408 (-) True G211451
XR_005637895.1 other upstream 890392 14221793 ~ 14259784 (-) False adam11
XR_005637896.1 other upstream 891810 14223211 ~ 14259784 (-) False adam11
TU288038 other upstream 1255225 14586626 ~ 14588985 (-) True G212470
XR_005637823.1 other upstream 1273977 14605378 ~ 14627858 (-) True ccdc186
TU288177 other upstream 1885867 15217268 ~ 15219425 (-) False fra10ac1

Expression Profile