RNA id: unassigned_transcript_1163


Basic Information

Item Value
RNA id unassigned_transcript_1163
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnal-uag_19
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10342517 ~ 10342598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAGCGTGGCCGAGTGGTCTAAGGCGCTGGATTTAGGCTCCAGTCATTTCGATGgcgtgggttcgaatcccaccGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637848.1 lncRNA downstream 124813 10210532 ~ 10217704 (-) True LOC120551240
TU286247 lncRNA downstream 178852 10163385 ~ 10163665 (-) True G211235
TU286241 lncRNA downstream 200821 10140593 ~ 10141696 (-) True G211229
TU286222 lncRNA downstream 252450 10084575 ~ 10090067 (-) True G211214
TU286237 lncRNA downstream 258701 10083547 ~ 10083816 (-) True G211225
TU286536 lncRNA upstream 8112 10350710 ~ 10361903 (-) False G211440
TU286537 lncRNA upstream 8112 10350710 ~ 10361903 (-) False G211440
TU286538 lncRNA upstream 8112 10350710 ~ 10361903 (-) True G211440
TU286569 lncRNA upstream 25023 10367621 ~ 10368221 (-) True G211464
TU286635 lncRNA upstream 157655 10500253 ~ 10561402 (-) False sec24c
XM_039788500.1 mRNA downstream 19833 10300363 ~ 10322684 (-) True LOC120551235
XM_039788499.1 mRNA downstream 99038 10240422 ~ 10243479 (-) True arl3b
XM_039788470.1 mRNA downstream 132266 10176970 ~ 10210251 (-) True LOC120551219
XM_039788471.1 mRNA downstream 132269 10176970 ~ 10210248 (-) False LOC120551219
XM_039788487.1 mRNA downstream 170514 10169714 ~ 10172003 (-) False LOC120551227
XM_039788467.1 mRNA upstream 42779 10385377 ~ 10394268 (-) True LOC120551217
XM_039788461.1 mRNA upstream 67011 10409609 ~ 10415002 (-) True LOC120551210
XM_039788448.1 mRNA upstream 98263 10440861 ~ 10488302 (-) False LOC120551205
XM_039788445.1 mRNA upstream 98263 10440861 ~ 10488302 (-) True LOC120551205
XM_039788459.1 mRNA upstream 98263 10440861 ~ 10488301 (-) False LOC120551205
TU286556 other downstream 13109 10326667 ~ 10329408 (-) True G211451
XR_005637844.1 other downstream 171332 10169714 ~ 10171185 (-) True LOC120551227
TU286058 other downstream 448104 9887314 ~ 9894413 (-) True G211113
TU285814 other downstream 1749453 8589241 ~ 8593064 (-) True G210928
TU285754 other downstream 2057786 8282960 ~ 8284731 (-) False LOC120551255
unassigned_transcript_1165 other upstream 514144 10856742 ~ 10856835 (-) True trnai-uau_4
XR_005637842.1 other upstream 522497 10865095 ~ 10891987 (-) False mta3
TU286738 other upstream 653722 10996320 ~ 10999853 (-) False nrxn1a
XR_005637762.1 other upstream 2892133 13234731 ~ 13331422 (-) False LOC120550679
XR_005637895.1 other upstream 3879195 14221793 ~ 14259784 (-) False adam11

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU226386 True 261 lncRNA 0.38 1 CI01000047 581414 ~ 581674 (+)
rainbow trout (Oncorhynchus mykiss) trnal-uag-54 True 82 mRNA 0.60 1 NC_048587.1 46685309 ~ 46685390 (+)
striped catfish (Pangasianodon hypophthalmus) trnal-uag_1 True 72 tRNA 0.60 1 NC_047606.1 6773603 ~ 6773674 (+)
striped catfish (Pangasianodon hypophthalmus) trnal-uag_3 True 82 tRNA 0.60 1 NC_047606.1 8475259 ~ 8475340 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1807 True 82 tRNA 0.60 1 NC_056710.1 2493710 ~ 2493791 (-)
mexican tetra (Astyanax mexicanus) trnal-uag_1 True 82 tRNA 0.62 1 NC_035900.1 17095245 ~ 17095326 (-)
mexican tetra (Astyanax mexicanus) trnal-uag_3 True 82 tRNA 0.63 1 NC_035916.1 14927328 ~ 14927409 (+)