RNA id: trnal-uag_1


Basic Information

Item Value
RNA id trnal-uag_1
length 82
RNA type tRNA
GC content 0.62
exon number 1
gene id trnal-uag_1
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17095245 ~ 17095326 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTAGCGTGGCCGAGTGGTCTAAGGCGCTGGATTTAGGCTCCAGTCATTTCGATggcgtgggttcgaatcccaccGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50140 lncRNA downstream 3194 17091742 ~ 17092051 (-) True G37206
TU50126 lncRNA downstream 40827 17047607 ~ 17054418 (-) False crym
TU50121 lncRNA downstream 54304 17036556 ~ 17040941 (-) True G37191
TU50116 lncRNA downstream 68303 17026457 ~ 17026942 (-) True G37186
TU50119 lncRNA downstream 74317 17020721 ~ 17020928 (-) True G37189
TU50155 lncRNA upstream 13386 17108712 ~ 17110709 (-) True G37213
TU50158 lncRNA upstream 17176 17112502 ~ 17116008 (-) True G37215
TU50160 lncRNA upstream 26449 17121775 ~ 17122201 (-) True G37217
TU50195 lncRNA upstream 145850 17241176 ~ 17327596 (-) True G37237
TU50196 lncRNA upstream 146394 17241720 ~ 17247453 (-) True G37238
XM_007251285.3 mRNA downstream 27263 17065403 ~ 17067982 (-) True LOC103032763
XM_015606335.2 mRNA downstream 32298 17053529 ~ 17062947 (-) False crym
XM_007251291.3 mRNA downstream 32300 17053529 ~ 17062945 (-) True crym
XM_022669417.1 mRNA downstream 179960 16913576 ~ 16915285 (-) True LOC103043629
XM_007251305.3 mRNA downstream 201728 16875022 ~ 16893517 (-) True LOC103037732
XM_007251319.2 mRNA upstream 53215 17148541 ~ 17169878 (-) True LOC103043322
XM_007251275.3 mRNA upstream 84021 17179347 ~ 17184427 (-) True LOC103030148
XM_007251274.3 mRNA upstream 92341 17187667 ~ 17198837 (-) True LOC103029821
XM_007251272.3 mRNA upstream 109006 17204332 ~ 17212783 (-) False LOC103028774
XM_007251270.3 mRNA upstream 109006 17204332 ~ 17210607 (-) True LOC103028774
TU50113 other downstream 76327 17016128 ~ 17018918 (-) True G37183
TU49443 other downstream 1254760 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 1325716 15755613 ~ 15769529 (-) False G36677
TU50180 other upstream 84052 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 278858 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 337646 17432972 ~ 17466024 (-) True G37290
TU50267 other upstream 337646 17432972 ~ 17463317 (-) False G37290
TU50318 other upstream 488724 17584050 ~ 17653785 (-) False LOC103025753

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU226386 True 261 lncRNA 0.38 1 CI01000047 581414 ~ 581674 (+)
rainbow trout (Oncorhynchus mykiss) trnal-uag-54 True 82 mRNA 0.60 1 NC_048587.1 46685309 ~ 46685390 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_1163 True 82 tRNA 0.60 1 NC_053132.1 10342517 ~ 10342598 (-)
striped catfish (Pangasianodon hypophthalmus) trnal-uag_3 True 82 tRNA 0.60 1 NC_047606.1 8475259 ~ 8475340 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1807 True 82 tRNA 0.60 1 NC_056710.1 2493710 ~ 2493791 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_1163 True 72 tRNA 0.56 1 NC_056704.1 13443318 ~ 13443389 (-)
mexican tetra (Astyanax mexicanus) trnal-uag_3 True 82 tRNA 0.63 1 NC_035916.1 14927328 ~ 14927409 (+)