LOC103024241 (maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233)


Basic Information

Item Value
gene id LOC103024241
gene name maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17374184 ~ 17381733 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50205
GTTTCCGAACTCCGACTTTGAGGCACATCGACGGATATCTGTTACTGGGCTGCGGCGacggaggaggagcaggaggaggaaaagagtaaaataaacaacaggcgagccgctgccgctgctgctgctttttacTGGGCGCCAGGCAAACAAAAACGCAACAATGACATCAGACGCCCGAGCCAGCAAAGCCCTCAAGGTGAAGAGGGAGTGTGGAGAAAATGTTCCTGTGCTTTCAGACAGTGAGCTCATGTCTTTGTCGGTGCGCGAGCTGAACCTGCACCTGCGCGGTTTATCGAGAGAGGAGATCCAGaagctgaaacagaggcggcgcACGCTCAAGAACCGTGGCTACGCTGCGAGCTGCAGGGTGAAGCGCGTATCTCAGCGAGAAGCTCTGGAACAGCAGAAGAAGGAGCTTCAGCGCGAGGTGGAGCGGCTGGGCGCTGAGAACGCGGGCATGCGGCGGGAGCTGGAGGGGCTTGGTGCTCGGTTGGCCGCCCTGCAACGCTTCGCCCGAGGCTTGGAGGCCGGAGGAGGAAGCCTTCTGGCCACAGCCCCTCGCCTTAACACCGCCTCAGTCATCACCATAGTGAAGAGCCCACAGCagggccacgcccacagagaaCAGGAAGCGTCCTAGGGATGGCTGTTATTAGCAACAGGTGCACAAAATCACATGCagctacactcttaaaaataaaggtgccatGGGtgggtgagagagtgagtgtgaaggGCCTTCACATCTTCACCATGGTGTAAAATGTTCCTATCAAGGAGAGGTTTTATCCAAGCCAAGAAGCACATggaaacctttatttttaagagtgtacagAGAGGTACACAACACAGACCAGATACAATAACTGGACCATTTAAGCTGAACTGAATAACGGACTGACTGGCAAGCATTTCGATTTAGAAATGTCTTAAAAGATGTTTTCCTGAAGTCAGTGGAACTGATGATGAGGTATGTTTTCAGATTGGTCATTGGCTCAAGCTCTTACATGTATACAGGTCTAACAGTATACCTAcctagggttgggcggtatttAGAAGATAAAGCTTCAAACCTGCGCACACAAGCGAGTAAATGATCTTAGGAGTAAGGCACATCCTGCAGACGCATGTGTTTTTAAGTTTAGTGGCTTTTCCTTTGATTTGAACAGAGTACATTGCTAAACGTACAGGAGCTCTGTCTTAAATTCGAGTGCGCATCCATCCTGTGGCCATATTAAATGCACATGAATGAATAAGCTATTTTGGCCTGTATTAGTTAGTTTACACAGAGCATAAATCTGGCATGTCAGTCTTTAGAGATACCTTTAAAATATGGTATTACTGTTGTACCGTCCAACCCTGTACCAATCATTACAGTTCATACATACATTGTGAGCTGGTGAGTTCCACTTTCTTGTAAATGTCCCAGACTGGCTTCTGTCCACTGCCTCTCTTGTGAGGcacttaatttgtttgttttttgtttgtaatttcaACATTTAGAATGACCATTTCGTCTCCATGAGCTGATGTTAAACTCATGTTTCTATGGTCAGCCTATAACGTTGACTTTAACCAGTATAAAAAAAGATGTGAGTAGGGTGTTGTTGGTCAGTTTACATGCTATTTAGCTCAAAGATGTCCTAATCACACCATTAATATTATATGCTTTACTTTTTGGCCTTACATGATGATACTAGTCACAACTGTACAGGTCTTTACTGGAGTAACGACTGAACTCGACTTTAATATCTCTTGACTACCAACTTTCCTATAAGTTGGCAAACACTGCTGGAATATATTGATAACTACCATTAGTCACGGAACTGGGCTCGGTTTACCCAAAGCATCTTGGCACAAGGATAGACCCTAACTCCTAAATGGCAGAGCAAGCATCATCACACTGTGATCCACTTTATCTACCAGTTAAGGCCATCTTAATACGGAGATGCTGTTATTGGGAAACTGGGCCCAGACCAGTAGAATGCCACGTCAATGCAAGCTTAAACATTCctgtataataattatttttaatacttaaacAAAAGACAAATAATCTGCAAAATCGAGAGCTGTTTTATCTCTATTTAAGATGAAGACCTTTAAGCTAAGAAGAGCTGTGATTTTAAGTCCAAATACTGCTTATGTGCTTATGTATGACTAGCTTAGGGATGTTGCCGTGTCTGAATTAATGTAATgggtatgatttttttttttttggtttcgtATGTAgggtttactgttttaatgaggaATTTAGCTATGTTTAGAGATATGGCTCTATTACTGTAACttgattcagtgtgtgtgtgtgtgtgtgaaggtcaTATTTGTGTTATTACAGTATAGTGGCTTGTCAGTAgtggtatttttttgtatttaaaagtaGAATGATAATTATTGATATTTATAACAACAAAATACATCTGGACGCTTAAACAGTATCACATGAGAGGAAGATGTGGGAAAGAAAGGGATGAGGGGAGAAAGAGGGTAAGAGATCGATTGAAAAGTTAAGAAAACATGTTGCTGtccaaaaaataactaaataaataaataaaaggtatctacaaaatgagaaattgtaAGGGTATAAATGAAAGTCAGAAGAGGAGATTAATGTTGTAATGTTGGAAAATATtggaaagtattttttttttttttttggacagcgaAGTGAAGTAAAGGAGAAAAGTAGGTTGTTAAGAAAGTGACAGAAGGAATGAGAGATGGACAGAAATACAGACAGGAGTGACTGTAAATGTTCACGTTTAACCCGTAGTTGGACAAGAAAATTGCCAACTATTAGCCAGAAGAGGGGGTAATATGCTGTATAGGGGTTGATATTTGTAGATGGAAAGATTTTTATTGCTAATTCCCTATTAAATCTGTTTAGCTATTTCAATGTTCATATTGAGGAGCACTTGACTTAATATCATTATGCTTTCTGTTTCTAAACATGCTGGATGTTTTGTAAAGTAGCAAAACATAAGTATTTATTACCTGTATTTTTCTATggtaaagtaaatatattgtcTATTTTATACCattaattgaaataaatgtatatattgtacATAC
>XM_007251252.3
TCTCATTCCTGAGCTGCTGCgtcactcctcctcctcctccgcgcTGAGTGTTTATGAATGAGAGTCCCGCGGTGATTCCGGGAAAAGGCGGGTCGCTCTGCTTCTCCTTTAAACGCGTTCACTTGTCTTCCCTTCAGTTTCCGAACTCCGACTTTGAGGCACATCGACGGATATCTGTTACTGGGCTGCGGCGacggaggaggagcaggaggaggaaaagagtaaaataaacaacaggcgagccgctgccgctgctgctgctttttacTGGGCGCCAGGCAAACAAAAACGCAACAATGACATCAGACGCCCGAGCCAGCAAAGCCCTCAAGGTGAAGAGGGAGTGTGGAGAAAATGTTCCTGTGCTTTCAGACAGTGAGCTCATGTCTTTGTCGGTGCGCGAGCTGAACCTGCACCTGCGCGGTTTATCGAGAGAGGAGATCCAGaagctgaaacagaggcggcgcACGCTCAAGAACCGTGGCTACGCTGCGAGCTGCAGGGTGAAGCGCGTATCTCAGCGAGAAGCTCTGGAACAGCAGAAGAAGGAGCTTCAGCGCGAGGTGGAGCGGCTGGGCGCTGAGAACGCGGGCATGCGGCGGGAGCTGGAGGGGCTTGGTGCTCGGTTGGCCGCCCTGCAACGCTTCGCCCGAGGCTTGGAGGCCGGAGGAGGAAGCCTTCTGGCCACAGCCCCTCGCCTTAACACCGCCTCAGTCATCACCATAGTGAAGAGCCCACAGCagggccacgcccacagagaaCAGGAAGCGTCCTAGGGATGGCTGTTATTAGCAACAGGTGCACAAAATCACATGCagctacactcttaaaaataaaggtgccatGGGtgggtgagagagtgagtgtgaaggGCCTTCACATCTTCACCATGGTGTAAAATGTTCCTATCAAGGAGAGGTTTTATCCAAGCCAAGAAGCACATggaaacctttatttttaagagtgtacagAGAGGTACACAACACAGACCAGATACAATAACTGGACCATTTAAGCTGAACTGAATAACGGACTGACTGGCAAGCATTTCGATTTAGAAATGTCTTAAAAGATGTTTTCCTGAAGTCAGTGGAACTGATGATGAGGTATGTTTTCAGATTGGTCATTGGCTCAAGCTCTTACATGTATACAGGTCTAACAGTATACCTAcctagggttgggcggtatttAGAAGATAAAGCTTCAAACCTGCGCACACAAGCGAGTAAATGATCTTAGGAGTAAGGCACATCCTGCAGACGCATGTGTTTTTAAGTTTAGTGGCTTTTCCTTTGATTTGAACAGAGTACATTGCTAAACGTACAGGAGCTCTGTCTTAAATTCGAGTGCGCATCCATCCTGTGGCCATATTAAATGCACATGAATGAATAAGCTATTTTGGCCTGTATTAGTTAGTTTACACAGAGCATAAATCTGGCATGTCAGTCTTTAGAGATACCTTTAAAATATGGTATTACTGTTGTACCGTCCAACCCTGTACCAATCATTACAGTTCATACATACATTGTGAGCTGGTGAGTTCCACTTTCTTGTAAATGTCCCAGACTGGCTTCTGTCCACTGCCTCTCTTGTGAGGcacttaatttgtttgttttttgtttgtaatttcaACATTTAGAATGACCATTTCGTCTCCATGAGCTGATGTTAAACTCATGTTTCTATGGTCAGCCTATAACGTTGACTTTAACCAGTATAAAAAAAGATGTGAGTAGGGTGTTGTTGGTCAGTTTACATGCTATTTAGCTCAAAGATGTCCTAATCACACCATTAATATTATATGCTTTACTTTTTGGCCTTACATGATGATACTAGTCACAACTGTACAGGTCTTTACTGGAGTAACGACTGAACTCGACTTTAATATCTCTTGACTACCAACTTTCCTATAAGTTGGCAAACACTGCTGGAATATATTGATAACTACCATTAGTCACGGAACTGGGCTCGGTTTACCCAAAGCATCTTGGCACAAGGATAGACCCTAACTCCTAAATGGCAGAGCAAGCATCATCACACTGTGATCCACTTTATCTACCAGTTAAGGCCATCTTAATACGGAGATGCTGTTATTGGGAAACTGGGCCCAGACCAGTAGAATGCCACGTCAATGCAAGCTTAAACATTCctgtataataattatttttaatacttaaacAAAAGACAAATAATCTGCAAAATCGAGAGCTGTTTTATCTCTATTTAAGATGAAGACCTTTAAGCTAAGAAGAGCTGTGATTTTAAGTCCAAATACTGCTTATGTGCTTATGTATGACTAGCTTAGGGATGTTGCCGTGTCTGAATTAATGTAATgggtatgatttttttttttttggtttcgtATGTAgggtttactgttttaatgaggaATTTAGCTATGTTTAGAGATATGGCTCTATTACTGTAACttgattcagtgtgtgtgtgtgtgtgtgaaggtcaTATTTGTGTTATTACAGTATAGTGGCTTGTCAGTAgtggtatttttttgtatttaaaagtaGAATGATAATTATTGATATTTATAACAACAAAATACATCTGGACGCTTAAACAGTATCACATGAGAGGAAGATGTGGGAAAGAAAGGGATGAGGGGAGAAAGAGGGTAAGAGATCGATTGAAAAGTTAAGAAAA
>XM_022669224.1
CTGGTTAtatggctagctagctaaccgaGCTTAGATAGCTAACTGTGTAGCATGGTTAACACCCGGAGCGGTgtttatgtgtatttgtgtgttggTGGAGATTTACAGAAGGCTATGTGGCTATGTGTTTAGGACTGGGTGCTTTTAATAATTGATGTTAGCTAGTGAGCTGTGCCTGTGCTTGgtctacgtgtgtgtgtgtgtgtgtatatgtctgtTTACCACGAGAACAGGATGACATGACACTTTACTCGCTAGCTAGCAAACTAGGCGCCAGGCAAACAAAAACGCAACAATGACATCAGACGCCCGAGCCAGCAAAGCCCTCAAGGTGAAGAGGGAGTGTGGAGAAAATGTTCCTGTGCTTTCAGACAGTGAGCTCATGTCTTTGTCGGTGCGCGAGCTGAACCTGCACCTGCGCGGTTTATCGAGAGAGGAGATCCAGaagctgaaacagaggcggcgcACGCTCAAGAACCGTGGCTACGCTGCGAGCTGCAGGGTGAAGCGCGTATCTCAGCGAGAAGCTCTGGAACAGCAGAAGAAGGAGCTTCAGCGCGAGGTGGAGCGGCTGGGCGCTGAGAACGCGGGCATGCGGCGGGAGCTGGAGGGGCTTGGTGCTCGGTTGGCCGCCCTGCAACGCTTCGCCCGAGGCTTGGAGGCCGGAGGAGGAAGCCTTCTGGCCACAGCCCCTCGCCTTAACACCGCCTCAGTCATCACCATAGTGAAGAGCCCACAGCagggccacgcccacagagaaCAGGAAGCGTCCTAGGGATGGCTGTTATTAGCAACAGGTGCACAAAATCACATGCagctacactcttaaaaataaaggtgccatGGGtgggtgagagagtgagtgtgaaggGCCTTCACATCTTCACCATGGTGTAAAATGTTCCTATCAAGGAGAGGTTTTATCCAAGCCAAGAAGCACATggaaacctttatttttaagagtgtacagAGAGGTACACAACACAGACCAGATACAATAACTGGACCATTTAAGCTGAACTGAATAACGGACTGACTGGCAAGCATTTCGATTTAGAAATGTCTTAAAAGATGTTTTCCTGAAGTCAGTGGAACTGATGATGAGGTATGTTTTCAGATTGGTCATTGGCTCAAGCTCTTACATGTATACAGGTCTAACAGTATACCTAcctagggttgggcggtatttAGAAGATAAAGCTTCAAACCTGCGCACACAAGCGAGTAAATGATCTTAGGAGTAAGGCACATCCTGCAGACGCATGTGTTTTTAAGTTTAGTGGCTTTTCCTTTGATTTGAACAGAGTACATTGCTAAACGTACAGGAGCTCTGTCTTAAATTCGAGTGCGCATCCATCCTGTGGCCATATTAAATGCACATGAATGAATAAGCTATTTTGGCCTGTATTAGTTAGTTTACACAGAGCATAAATCTGGCATGTCAGTCTTTAGAGATACCTTTAAAATATGGTATTACTGTTGTACCGTCCAACCCTGTACCAATCATTACAGTTCATACATACATTGTGAGCTGGTGAGTTCCACTTTCTTGTAAATGTCCCAGACTGGCTTCTGTCCACTGCCTCTCTTGTGAGGcacttaatttgtttgttttttgtttgtaatttcaACATTTAGAATGACCATTTCGTCTCCATGAGCTGATGTTAAACTCATGTTTCTATGGTCAGCCTATAACGTTGACTTTAACCAGTATAAAAAAAGATGTGAGTAGGGTGTTGTTGGTCAGTTTACATGCTATTTAGCTCAAAGATGTCCTAATCACACCATTAATATTATATGCTTTACTTTTTGGCCTTACATGATGATACTAGTCACAACTGTACAGGTCTTTACTGGAGTAACGACTGAACTCGACTTTAATATCTCTTGACTACCAACTTTCCTATAAGTTGGCAAACACTGCTGGAATATATTGATAACTACCATTAGTCACGGAACTGGGCTCGGTTTACCCAAAGCATCTTGGCACAAGGATAGACCCTAACTCCTAAATGGCAGAGCAAGCATCATCACACTGTGATCCACTTTATCTACCAGTTAAGGCCATCTTAATACGGAGATGCTGTTATTGGGAAACTGGGCCCAGACCAGTAGAATGCCACGTCAATGCAAGCTTAAACATTCctgtataataattatttttaatacttaaacAAAAGACAAATAATCTGCAAAATCGAGAGCTGTTTTATCTCTATTTAAGATGAAGACCTTTAAGCTAAGAAGAGCTGTGATTTTAAGTCCAAATACTGCTTATGTGCTTATGTATGACTAGCTTAGGGATGTTGCCGTGTCTGAATTAATGTAATgggtatgatttttttttttttggtttcgtATGTAgggtttactgttttaatgaggaATTTAGCTATGTTTAGAGATATGGCTCTATTACTGTAACttgattcagtgtgtgtgtgtgtgtgtgaaggtcaTATTTGTGTTATTACAGTATAGTGGCTTGTCAGTAgtggtatttttttgtatttaaaagtaGAATGATAATTATTGATATTTATAACAACAAAATACATCTGGACGCTTAAACAGTATCACATGAGAGGAAGATGTGGGAAAGAAAGGGATGAGGGGAGAAAGAGGGTAAGAGATCGATTGAAAAGTTAAGAAAA

Function

symbol description
maff Enables DNA binding activity and protein heterodimerization activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of transcription, DNA-templated. Part of transcription regulator complex. Orthologous to human MAFF (MAF bZIP transcription factor F).

NR:

description
transcription factor MafF

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50205 True 3081 TUCP 0.41 3 17374184 17381597
XM_007251252.3 False 2658 mRNA 0.44 3 17374743 17381733
XM_022669224.1 False 2657 mRNA 0.43 3 17374743 17381415

Neighbor

gene id symbol gene type direction distance location
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 48269 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 85352 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 142045 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 161401 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 175347 17187667 ~ 17198837 (-)
rsl1d1 NA coding upstream 33342 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 49273 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 60908 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 118736 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 128227 17509960 ~ 17517710 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 36862 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 46588 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 126731 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 251983 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 258176 17112502 ~ 17116008 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 4108 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 107152 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 171839 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 324001 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 744801 18126534 ~ 18126807 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 189757 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 311237 17047607 ~ 17062947 (-)
G37183 NA other downstream 355266 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 458899 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1533668 15837105 ~ 15840516 (-)
G37290 NA other upstream 51239 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 92177 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 152970 17534703 ~ 17689384 (-)
cntd1 NA other upstream 310764 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 408218 17789951 ~ 17795988 (-)

Expression


Co-expression Network