G37238 (pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950)


Basic Information

Item Value
gene id G37238
gene name pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17241720 ~ 17247453 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50196
TATTCTTCCTATCAATACCTCATAATGTAAATACTTTCTTAGTCCTGGAGAGCACTTTACAAATGttcacttttcaaaatgtatacatttttgaGCTGAGCTAAATGTTGCATCACCTGCATCAGTGTAGTATTGCTTTCCTTACTGTTCAAGGCAATTCAGGTCCCACAAAAAGACTGAAGCATACAATATTCACACAAGAGATATCTCTCGAGTGGGTCATGGACaattaaaggcaaaaaaaaaagattatttttttagaggAAAGCATGAACACCAAGTGGATAAAACAAGAAGTAAACCTTTTCTgcttaaaatatctatatattgtgAACATTACAAAAGATGGTGGATTAATACTGCTGATGCCCTGTTCATAGGCAAATCAACTTTTTACTTATTAATGGAATAACACATAATCTTCTGTGAATCAGCAAAATGACATTTGATACATCAAAAAACTGACATGCACGCGAAAAATATGCTCATTCAGAGCAGGTGAATCTTTCTCTAGGTAGCTTATGCATTTGAAAATTAAGAAACATGATGCCACAGAAGTGGGCACAGGCCAGAACAGGAGCAGATGGTGTTCTACAGGTGCTACAGGTTTGCTAGTGTTTCTCCATTCTCTACTTTACCCCACTCCTTTAGTACAGGTCAGGAGACATCATTAAGGGCACAACCCGCCCAAACCTTCAACAGTATCCCAATCAGaggtacattaaaatatatcaaaagAGCTAATTTGTAAGAGTAAACTCCAGCAGCTTTAGGATCAGAGCACAGTGGAGGTGTGGGGGCAAAAAGGGCATTACGGTGCTCCATACCAACCTCTATTTTAAGGAGTTTTAGCTCCTGCCTTTAACCCCCACTTCTAGCCGACTCTTTAAAATGTCCAAATCGCCGTCCTGTCCCGCTCCAGTGGAGGATGAAAAGACGGTGTGCCTGGACACCCCTGAGCTGAATCCCTAATTAATTTGGTCCCTTCCCTCCCACCCCAGTGAAGCCCTGTCCTGAGGGGTGGGAAGGAGGCTAACGTTTAGACTTGGCCTCCTGTGCCTCTTTttCTTTCctcatttcttctctttttttggcTGCATCTTCTCTTTGTTTCTTAATAATAGCAAGTCTAGCCAAATCTGCCCTGGCCTGCTCAGTCTTCCCCTCTAGATGCAGCTTCATGTAGCGCTCCTTTGCTTTCTGTTTCTCAATCTCCTCTCTTTCTCTGCGCGAGAGCTCTTTTGGCGCATTGTCGTCTATTTCTGTaacttttttgcttttctggGAGATACGATTTGGATTCTCGATTTCAATCAATCCTGCCACTCCACTCTTCTTTTGGTCTTGCTCATCTTCACTGCTGCTTTCCTCCTCAGAGTCTGAAGCACTTTCACGTTCTACACCACCATTTGCCtcTTTTTCCCTCTGTGCTCGCATCTGTCGGTCAATTTCTTCAGGATTGCTGAACTGTTTGCCACGACCTTTGTAGCCTTTTTTTCTCCTCTGGGCATTGTTAACGTAGTCCGGAACCGCGAGAGAGAAACCTGCGAACTAAATCTAGCTCTTgtgagtgttttatttattttatattaaaatgatgagttttgttCTCAAGGCCCTCGACTGCTGGATGTGCTCGAAGAACAACGTTGCCGCTTCCTG

Function

symbol description
pdap1a Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1).

NR:

description
28 kDa heat- and acid-stable phosphoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50196 True 1662 lncRNA 0.42 6 17241720 17247453

Neighbor

gene id symbol gene type direction distance location
LOC103028243 LOC108431941,LOC107584177 coding downstream 9581 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 28937 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 42883 17187667 ~ 17198837 (-)
LOC103043322 NA coding downstream 71842 17148541 ~ 17169878 (-)
trnal-uag_1 NA coding downstream 146394 17095245 ~ 17095326 (-)
LOC103027309 NA coding upstream 25920 17273373 ~ 17288832 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding upstream 71753 17319206 ~ 17325915 (-)
rsl1d1 NA coding upstream 167622 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 183553 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 195188 17442641 ~ 17466671 (-)
G37217 NA non-coding downstream 119519 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 125712 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 131011 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 149669 17091742 ~ 17092051 (-)
G37191 sun1 non-coding downstream 200779 17036556 ~ 17040941 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 88138 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 138388 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 241432 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 306119 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 458281 17705734 ~ 17708605 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 57293 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 178773 17047607 ~ 17062947 (-)
G37183 NA other downstream 222802 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 326435 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1401204 15837105 ~ 15840516 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 126731 17374184 ~ 17381733 (-)
G37290 NA other upstream 185519 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 226457 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 287250 17534703 ~ 17689384 (-)
cntd1 NA other upstream 445044 17692497 ~ 17705023 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014992 LOC107591697,LOC107720054,LOC102309547 coding CM030128.1 CM030128.1 41845859 ~ 41849769 (-)