G37309


Basic Information

Item Value
gene id G37309
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17553572 ~ 17555922 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50307
AGAACAGTCTGTTCACCCAGATTGCAGGCAATATAACTGTCCCTTCAGTGGTAGAACATTCAGTTGTAGCTTTAAGGGTACACTGTGTTCACCCTCCCCGGAGAAAGGgggtgtttttgcatttttcataaCTTAACtgtaaacccaaataaacataaaaaagtggccatcgagagtgtctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaaaagtggCCAtcgagagtgtctacctgtaattaactctatataacattagaataaacccaaataaacataaagtcagtgttcagtaagagtgtctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaagtcagtgatcagtaagagtatctacctgtaattaactctatataacattagaatactaaacccaaataaacataaaaagtggCCAtcgagagtgtctacctgtaattaactctatataacattagaataaacccaaataaacataaagtcagtgttcagcgagagtgtctacctgtaattatgtctatataacattacaaaaaatgttgagcTGTCTGGATGGACTAATTTGTGGAATAATATTTTGGCTGAACACACCTCTTTTAGCTGTAGTGTATAGTGATTTTCTCTCTGGCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50307 True 1061 lncRNA 0.32 2 17553572 17555922

Neighbor

gene id symbol gene type direction distance location
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding downstream 35862 17509960 ~ 17517710 (-)
LOC103024821 LOC108425935 coding downstream 48755 17500469 ~ 17504817 (-)
LOC111192380 NA coding downstream 86901 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 115080 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 131777 17415075 ~ 17421795 (-)
wnk4 NA coding upstream 155078 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 247812 17803734 ~ 17820280 (-)
maz maz coding upstream 266836 17822758 ~ 17836906 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding upstream 283505 17839427 ~ 17872154 (-)
LOC103022355 NA coding upstream 348282 17904204 ~ 17918797 (-)
G37298 tmem101,LOC107720276 non-coding downstream 59157 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 163151 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 216250 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 225976 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 306119 17241720 ~ 17247453 (-)
G37333 LOC103045739 non-coding upstream 149812 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 570612 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 571332 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 582027 18137949 ~ 18139122 (-)
G37450 NA non-coding upstream 584870 18140792 ~ 18141076 (-)
LOC103025140 NA other downstream 76694 17473910 ~ 17476878 (-)
G37290 NA other downstream 87548 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 171839 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 369145 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 490625 17047607 ~ 17062947 (-)
cntd1 NA other upstream 136575 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 234029 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 726568 18282490 ~ 18317957 (-)
G37603 NA other upstream 1016769 18572691 ~ 18573176 (-)
G37616 NA other upstream 1077656 18633578 ~ 18635098 (-)

Expression


Co-expression Network