LOC103025140


Basic Information

Item Value
gene id LOC103025140
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17473910 ~ 17476878 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50286
GTAGAAGAGAGAAGGAAGGGTGGAGGAGTTCAGTCTgctgagaggaggagaggaggagctgCTGATGATCTCTTAGGAGATCTCAGAACATTTCTCTGACAGCTGGGAGTCCCACTGAACAGCCAAGATGGCCCGGGACATGTCAGATAAAGACATCATGAAGATGGAGCTGGATCAGCTGAAGATAGAAGTCAAAACATCCAGAACTGCAGTTTCTGCCACTGCTCCTGACATCATCTCCTACGTCGAGGCTCGGTCCGGAGAAGATCCGCTGGTCAAGGGAGTTCCTGAGGACAAGAACCCCTTCAAGGAGAAGGGAGGCTGCATCATTACATAGCATTTGCTCTCCACTGGCCACACTCTTAAACAGAAGGCTTCCTGGAGGGATCTTGCAGGGTTCTGGGCATCTGCAGGCAACTATGTGAAGATAAATCACCTGCAGGGCCTTCTCATGGCCCTTTCTTTAAAGAGCAGTAGAAGCAAAACCACCACCGTGTTTTACAGAAGCCCCAATTCAAGAATTTCAACTGTTAACCATTCGGGTTCCAACACAAAGAACCCTGGAAGTGATTCTTCATGGTGCTTTTTCTTTTAAGAGCTtttaaaggcatatttttttaaagaacagtcTGGAGAAGTAAATCTATATGGACATTCAGTGTTTAGAGTGTAACCTGGATGTTTGATAAGGATCAGTCAGTGATACAGTTAGTAAACGGGAAGGGACGCACACCTGAtgtttgtaatatattttttttctgccgactttatataataaatgcaGGTAGTTTCCAGTCCAAAACAGCCTCGCTTCTTATTTCATGGTAGCAGctataatatttgataatatttaaaagtgtaaatgtttttaatttaataattaagttGAGAAAGTTTGAGCACTGTAAAAGGCTGATAACCCTGTTGAGAAATACagtttaaagagccactaaaccctaaaccatatttttcccattattagctgaaatgtgttcctttgaagtaataaaacaatgAAGCCAGTACTgcttaaaaactttataaacatttcctaacctttaaaaaacacttttgttgtTGTAATTTGGTACGCAGACGCATCagaatatgcagatcagtcgaTCAATAATACTGCCCGCCCTGCACGTTCAACCCCTATTAGAAGCACACTGCTCCTACTGCTGCAGtctagccaatcagctctccctcctgccccgcctctaaaccaatacatcacccagtgctcctccctttttttagcctttgtcaaatttgagctgaggctgtagtcAGAAAAAATCTgagggtttagtgcccctttaatgGAACGAGACCTCAGAACACCTCTAATATCTACACAACCACTGGTcaagaaaaacagagacaaagaatgagaaaaagagagtccCTGCTTTTGCATTCGCAGAGTTTAGCAAATTGAGTGCAGTAGAACTGCAAACTGATTCAAATCAACAAGA
>XM_007239750.2
CCAATCCTCACCAGGATCAACCCAACCAGATGGAAGTGAGGTGTAGAAGAGAGAAGGAAGGGTGGAGGAGTTCAGTCTgctgagaggaggagaggaggagctgCTGATGATCTCTTAGGAGATCTCAGAACATTTCTCTGACAGCTGGGAGTCCCACTGAACAGCCAAGATGGCCCGGGACATGTCAGATAAAGACATCATGAAGATGGAGCTGGATCAGCTGAAGATAGAAGTCAAAACATCCAGAACTGCAGTTTCTGCCACTGCTCCTGACATCATCTCCTACGTCGAGGCTCGGTCCGGAGAAGATCCGCTGGTCAAGGGAGTTCCTGAGGACAAGAACCCCTTCAAGGAGAAGGGAGGCTGCATCATTACATAGCATTTGCTCTCCACTGGCCACACTCTTAAACAGAAGGCTTCCTGGAGGGATCTTGCAGGGTTCTGGGCATCTGCAGGCAACTATGTGAAGATAAATCACCTGCAGGGCCTTCTCATGGCCCTTTCTTTAAAGAGCAGTAGAAGCAAAACCACCACCGTGTTTTACAGAAGCCCCAATTCAAGAATTTCAACTGTTAACCATTCGGGTTCCAACACAAAGAACCCTGGAAGTGATTCTTCATGGTGCTTTTTCTTTTAAGAGCTtttaaaggcatatttttttaaagaacagtcTGGAGAAGTAAATCTATATGGACATTCAGTGTTTAGAGTGTAACCTGGATGTTTGATAAGGATCAGTCAGTGATACAGTTAGTAAACGGGAAGGGACGCACACCTGAtgtttgtaatatattttttttctgccgactttatataataaatgcaGGTAGTTTCCAGTCCAAAACA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50286 True 1478 lncRNA 0.42 3 17473910 17476836
XM_007239750.2 False 846 mRNA 0.46 3 17474584 17476878

Neighbor

gene id symbol gene type direction distance location
LOC111192380 NA coding downstream 7239 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 35418 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 52115 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 147995 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 185078 17273373 ~ 17288832 (-)
LOC103024821 LOC108425935 coding upstream 23591 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 33082 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 234122 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 326856 17803734 ~ 17820280 (-)
maz maz coding upstream 345880 17822758 ~ 17836906 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 83489 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 136588 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 146314 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 226457 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 351709 17121775 ~ 17122201 (-)
G37298 tmem101,LOC107720276 non-coding upstream 12007 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 76694 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 228856 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 649656 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 650376 18127254 ~ 18127560 (-)
G37290 NA other downstream 7886 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 92177 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 289483 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 410963 17047607 ~ 17062947 (-)
G37183 NA other downstream 454992 17016128 ~ 17018918 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 57825 17534703 ~ 17689384 (-)
cntd1 NA other upstream 215619 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 313073 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 805612 18282490 ~ 18317957 (-)
G37603 NA other upstream 1095813 18572691 ~ 18573176 (-)

Expression


Co-expression Network