LOC111192420


Basic Information

Item Value
gene id LOC111192420
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17431006 ~ 17438492 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669439.1
GAGTAACACATAATCACTGATAATATCAAAGGCGGTACCAAAATCCAGGAGTATAAAAACAGCGAGTCAGCTCCTGTCAAGTCACAGAAGTAGCTGGTTGGAGACTCCAGTTGAGACTGTTTCAGCGCTGGGACTGGGTCTAACTCCAGACTGGAAAACTTCAGAAACGCTGTTGTTCTGGAGACACCACATCTGGTCTGAAGCTCACACCTTCTGGGAACAGCTGGAAAACTACTGGGCATCTTTAGTATCAGCTACCCTGCATCTTTAGGAACCCTGTTCTTTTAGCTGCTGCAAAACTCATTTATCCACTTCAAGATGTGGCTGCTGGCGTTTCTGGTGTGGTTCCTGAGCTGGGCAGGTGGAATGTACTGGTATTTGTGTGGCAGACCGAGCCCTTTCTCAGAGGACTGTGTAAGACCTGCAGGACCAATGGAGCTTAACCAGAAGAAAAGAGACAAGCTTCTGAAGCAAGGCTTCGCCAAGCAGAAAGTGCCCAAAGATTTGGATGCAATCGTGATTGGCAGTGGTGTCGGTGGAATGACGGCAGCGGCTACAATTGCCAAAACTGGCAAGAAAGTCCTTGTGCTGGAGCAACACGACCAGGCTGGAGGCTGCTGCCACACCTTTATTGATAAAGGTTTTGAGTTTGATGTTGGGCTTCATTACGTCGGTCAGTTGCACGAGAACAGTTTGTTTAAGATCATTTTTGACCAGATCACTGAAGGCCAGCTGGAGTTTGCAGAGCTCGACCAGCATTTTGACACGGTCGTGATTGGCACAGGAAAGGAAACTAGGGAATACACTATCTGCTCCGGCAAAACTGAAATGGAGGAACATCTTAAAAAGCAGTTTCCTGATGACACCGAAGCCATTGAGGAATTCTTTAAGATCATGAAGGTAGAGTTTGATCTTTTGTCAGCTAGGAAGACTCCCTACTTGGCTGCAATGAAGCTGATTCCAGAGTGGCTGGCATTGTTCCTAGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCGGCTGTTAAGCATGAATGCTACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCGTACTACTTCTATGGTGAGACTCTTCACACAAACTTCATCTATGTCCAGcTGGTCTTCCAGGACGTAGCTACTCCACTGACCAACAATTTCTACCTCGGGTCGTACCGTGGAGCTATTTACTCAACTGATCACAACTTGGATCGCTATCACATGGATATAATGGCCAAGAACCGCTGTGAAACACCTGTCAAAAATCTCTATGTATCAGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCGGCTGTTAAGCATGAATGCCACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCGTACTACTTCTATGgtaaatcCTGCATGACTATTCTGACTATGGTCAATTATGAGTGGTTTGAGGAGTGGAAGGACACTCCAGTGAAAAGGCGAGGAGCTGACTACGTAGAATACAAGAACAGATTTGCCAAACATCTCTTTGACTGGGCCTGTGTCTTATACCCTAAACTCAGAGAAAAGcTGGTCTTCCAGGACGTAGCTACTCCACTGACCAACAATTTCTACCTCGGGTCGTACCGTGGAGCTATTTACTCAACTGATCACAACTTGGATCGCTATCACATGGATATAATGGCCAAGAACCGCTGTGAAACACCTGTCAAAAATCTCTATGTATCAGgTCAGGACATGTTTAGCTGTGGGATCATTGGTGCACTACATGGTGGGCTCATGTGTGCCTCTAGGGTGCTTGGACGCATGGTTTACATCGACCTCTTGGTGCTTAAGAAGAAGCTGAAGAAGAGGAAGGCTTTGGAACTGGCTGCACTGACTGAGAAGAAGCCCCCCCCTTTGCcaATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669439.1 True 1941 mRNA 0.47 11 17431006 17438492

Neighbor

gene id symbol gene type direction distance location
rsl1d1 NA coding downstream 9211 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 105091 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 142174 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 198867 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 218223 17204332 ~ 17212783 (-)
LOC111192380 NA coding upstream 4149 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 61977 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 71468 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 272508 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 365242 17803734 ~ 17820280 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 40585 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 93684 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 103410 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 183553 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 308805 17121775 ~ 17122201 (-)
G37298 tmem101,LOC107720276 non-coding upstream 50393 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 115080 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 267242 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 688042 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 688762 18127254 ~ 18127560 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 49273 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 246579 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 368059 17047607 ~ 17062947 (-)
G37183 NA other downstream 412088 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 515721 16913570 ~ 16915285 (-)
LOC103025140 NA other upstream 35418 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 96211 17534703 ~ 17689384 (-)
cntd1 NA other upstream 254005 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 351459 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 843998 18282490 ~ 18317957 (-)

Expression


Co-expression Network