LOC103043629 (LOC108412394)


Basic Information

Item Value
gene id LOC103043629
gene name LOC108412394
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 16913570 ~ 16915285 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49790
TCACCAACTCTGCGCTGAACCCGCTCTGCTACTGCTTCGTGGGCGAGCTGAGGCGATCCGCGCGCAGACTGGCCGCCAGCTACAGGCTGAGGGTCTCCGGACTATTCAGGAAGACCAAGGACTCAAAGAGCAGCAAGGCGcccgagagggagtgtgtgtgagcgcgCGTTACTGGTTAAAATGGGAGTTCCACCAATTTAACATCGACCATTTCATTAAGATCAGCCATTCATT
>XM_022669417.1
TGCGAGCAGTCAATCGTTGCACATTGTGGGCGGGGCTTGTCTGAATGCGGGTGGAAGAAACGAAGACGATTCTCTTCGGCGCTTCCAGACAGAGAGGAGCGGCgagaacacacacttacacactttcacacacaccgAACCGGAGCCGCGCGCGACCTGCCACGATGGAGAAGAGCGCGAGGtgtgtttggtttagtttaatcCGTTCTCCTCAGTAAATTAATCCTGTTTTCTACACGTTTTAAACCAACTGCGTTTTGGCGAGTTTTTTTATCTTCACTtttctaacatttaaaaaaacgtgTATTTCATCGTTTTTAACATCGAATGGaaaggtgtattttttatttttaaatccattttttgtggtttgtttgtttttggagtTTGAATTAATGAAACGAGGCTGAAAGGATGAGGACATGAATTTTTCAAGCCTCTTCGCCACATCGGGACCCCCAGGTCTCTCCAACTCGTCCCTCCGGACCCCCAGCAGCCACAACAGCAGCGCGTCTGTTCCTGCTCACCCTCCTTTACCTCCCCCTccgcttcctcctcctcctcaccctCACCTCCCCCCTATGGACGTGCTGTTCTCCGGGCGCGAGCCTGGCACGGTTCTCCTGGCGCTGATGTACGTGGCCTCGTTCCTGACGGGTCTGGCGGGGAACGTGACGGCTCTGCTTGCGCTGGGTGGCGGGAGGAAGGGCAGCAGGATGAAGGTGCTGAGGATGAGGAGCGCGTCCTCCGCCACGCGGCGCCTGCTGGCCAACCTGGCAGCGTGCGACACCCTGGTGGTGTGCGTGTGCATGCCGGCCAATCTGGGCCACCACGTGCACCGCGCGTGGCCGTTCGGGGAGCCGCTGTGTCGCGCGGTGCCCTTCGTGCAGGCGGTGTCGGTGTCGGCCAGCGTGCTCAGTCTGGCCGCGCTGGGACTCAGCCGCTACTGCGGCGTCCACAGCCCGTTGCGCGCGCGCCACGCCTTCACGGGGGCGCGCGTGGGCGTCGTGATCGCCGCCGTGTGGGCCGTGTCGTCGGGACTGTGCCTGCCGCTGCTCTTTACCAACGAGACGCGCACGCTCGAGCTCCCGGACGGCGCGCGCTCCGTGACGCTGTGCGTGGAGAGCTGGTCGGAGGCGCGCCTGCGCCAGGGCTACAACTTCCTTCTGTTCTGCGCGCTCTACGCCTTCCCCGTGCTCTTCAACCTGGTCATCTGCTCGCTCACCGTGCGCAAACTCTGGGGGGCAAAGCACGAGGCCGCCGAGTTCGGATTCACCCGCTCGGGTTCGCGCCTGGAAACGCGCAAGAGGATCGCCAAGATGGTGCTGGTGCTCGTGTTGCTCTTCACCTTCTCGTGGCTGCCGCTGTACGTGGTGGACATCTGGCTGGACTTCCACATGCCCGCGGACCGGGGGGGCGTGCCGGAGCGCGTGGAGCACGAGTGGGTGCTGCAGGGCCGGCCGTTCGCGCAGTGGCTCGGACTCACCAACTCTGCGCTGAACCCGCTCTGCTACTGCTTCGTGGGCGAGCTGAGGCGATCCGCGCGCAGACTGGCCGCCAGCTACAGGCTGAGGGTCTCCGGACTATTCAGGAAGACCAAGGACTCAAAGAGCAGCAAGGCGcccgagagggagtgtgtgtgagcgcgCGTTACTGGTTAAAATGGGAGTTCCACCAATTTAACATCGACCATTTCATTAAGATCAGCCA

Function

NR:

description
PREDICTED: gastrin/cholecystokinin type B receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49790 False 234 lncRNA 0.56 1 16913570 16913803
XM_022669417.1 True 1710 mRNA 0.60 1 16913576 16915285

Neighbor

gene id symbol gene type direction distance location
LOC103037732 NA coding downstream 20053 16875022 ~ 16893517 (-)
exoc6 exoc6,LOC107654070 coding downstream 47476 16798517 ~ 16866094 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding downstream 120063 16790627 ~ 16793507 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding downstream 200081 16538181 ~ 16713489 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding downstream 429425 16463328 ~ 16484145 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding upstream 150118 17065403 ~ 17067982 (-)
trnal-uag_1 NA coding upstream 179960 17095245 ~ 17095326 (-)
LOC103043322 NA coding upstream 233256 17148541 ~ 17169878 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding upstream 272382 17187667 ~ 17198837 (-)
LOC103028774 NA coding upstream 289047 17204332 ~ 17212783 (-)
G36922 reep3 non-coding downstream 161402 16742832 ~ 16752168 (-)
G36882 NA non-coding downstream 269005 16638592 ~ 16644565 (-)
G36845 NA non-coding downstream 424978 16487035 ~ 16488592 (-)
G36836 NA non-coding downstream 508087 16405253 ~ 16405483 (-)
G36807 NA non-coding downstream 666799 16246540 ~ 16246771 (-)
G37185 sun1 non-coding upstream 85087 17000372 ~ 17015898 (-)
G37189 NA non-coding upstream 105436 17020721 ~ 17020928 (-)
G37186 NA non-coding upstream 111172 17026457 ~ 17026942 (-)
G37191 sun1 non-coding upstream 121271 17036556 ~ 17040941 (-)
G37206 NA non-coding upstream 176457 17091742 ~ 17092051 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1073054 15837105 ~ 15840516 (-)
G36677 NA other downstream 1138977 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 2116358 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 3413393 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 3602045 13307088 ~ 13311525 (-)
G37183 NA other upstream 100843 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 132322 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 264062 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 458899 17374184 ~ 17381733 (-)
G37290 NA other upstream 517687 17432972 ~ 17466024 (-)

Expression


Co-expression Network