G37191 (sun1)


Basic Information

Item Value
gene id G37191
gene name sun1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17036556 ~ 17040941 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50121
cttTATTTAATCATTCCACACAACCAAAATAAAGCTTCATTGCAAAAGCCAACCTGTGGTCCCttaattacaaaattatttgaaaagtatttacaaaaatacacaatacaaagTCTTACTAAGATCAactcaaaatacacaaaaaataaatagtgatTAATAAACAGCCTTGTTTCGCTGAGCATTTGAAACTCATTACACTATGCAGGTAAGGGGCAAAAAGCAAATTATTAGCCGTGCTTAAAGCTGACAAACTATTAACAACATTTACAACATGTAGTTTAAAATACATTCTAGTCCATTTTATTTAGGTTTGACTTACTGAGTGTTTGAGTGCAATTCAGACCAATCCCGGTTATTCTGCCGGGTGCCCGCTGTTGGCCGAATACAAGAGGAGCTTAACCGAGTACAAGCCTCGTACGAGATATACAGGAGTACAAAATGCAGAGGAGCAAATCTAAAGGTTTAGCAAGCAGTCAGTTTGCCTGTCTCCAGACTGGACCAGATGGACTGATGGTACGCTGCCTCCTCTGTGAAACTCCAGTCTTAACCATGAAGTCCTGATCCAGCTCAGTCTTTGATCATTGCTGTGCAGGTTCGCCGTGCACCCGGAAACGGTAGAGGCAGGTATATTCCGGATGACCCCAGTTACTCAGCACTCTCAGCTCAATGATCTGGTAGGCCTTAGTGTTATCCGTGACATGGTAGGTCTGAAGAGGCTCTCCGTCTTCCTGGTAGACATATCGTCCCAGAATCTGTCCCTCTTCCTGCTGCTCATCTTCCAGGCCATAGACAGTGAAGTTCCGTGGAGCACTGCTGATGTTGCCGGTCGGTGAGAGGGTTTTGGGGATGTGCTCCACAGAAAAGGCTGTGGGCACGATCTTCATGGAGAGACGGATCACAAGATATCCATGAGAACCTCTAAATGCCCAGCAGTTACCAGGATGTACATCCGGCTGTATGACAGCACGAGGAGACTGAGAGAAGTACCACAGCGGCAGGCCAAACAGACTCATCAGTGCAGTCTTGGTCTCGTAGGTCTCTGAACAACGCGTACTCAGTACACTGCCACCTCCAGACTCCAGAGCATAATCCACAAGTCCAATGCGATCCTGTGAATAGAGCTTCAGAGCATTCTGCACAATCAGCTGCACTTGCGTTTCTGATAAGCCTGCATCGCCAGTGGTTTTTAGCACAGCCTTAGTGACAGTTTCTGCACAGGGCTTCTGCTGCGTCTGCTCCACCTGCAGAGACACGTTACCCAGAATGCTCCTCTCCAGGGCAGCGAGTGATGCCTGCAGGTCTGAGCTGCTCACAAATCGAGTCGACAGCCACTGCAGCAAAGACTCCGGCAGCTCAGTTCCTGCTTCCTGGTCTCGGCCGTACAGCAGAGACCGCATCTCCTGTCTAACCTGCTCAG

Function

symbol description
sun1 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN1 (Sad1 and UNC84 domain containing 1).

NR:

description
PREDICTED: SUN domain-containing protein 1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50121 True 1420 lncRNA 0.47 6 17036556 17040941

Neighbor

gene id symbol gene type direction distance location
LOC103037732 NA coding downstream 143039 16875022 ~ 16893517 (-)
exoc6 exoc6,LOC107654070 coding downstream 170462 16798517 ~ 16866094 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding downstream 243049 16790627 ~ 16793507 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding downstream 323067 16538181 ~ 16713489 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding downstream 552411 16463328 ~ 16484145 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding upstream 24462 17065403 ~ 17067982 (-)
trnal-uag_1 NA coding upstream 54304 17095245 ~ 17095326 (-)
LOC103043322 NA coding upstream 107600 17148541 ~ 17169878 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding upstream 146726 17187667 ~ 17198837 (-)
LOC103028774 NA coding upstream 163391 17204332 ~ 17212783 (-)
G37186 NA non-coding downstream 9614 17026457 ~ 17026942 (-)
G37189 NA non-coding downstream 15628 17020721 ~ 17020928 (-)
G37185 sun1 non-coding downstream 20658 17000372 ~ 17015898 (-)
G36922 reep3 non-coding downstream 284388 16742832 ~ 16752168 (-)
G36882 NA non-coding downstream 391991 16638592 ~ 16644565 (-)
G37206 NA non-coding upstream 50801 17091742 ~ 17092051 (-)
G37213 NA non-coding upstream 67771 17108712 ~ 17110709 (-)
G37215 NA non-coding upstream 71561 17112502 ~ 17116008 (-)
G37217 NA non-coding upstream 80834 17121775 ~ 17122201 (-)
G37237 tnrc6b non-coding upstream 200235 17241176 ~ 17327596 (-)
G37183 NA other downstream 17638 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 121271 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1196040 15837105 ~ 15840516 (-)
G36677 NA other downstream 1261963 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 2239344 14785952 ~ 14797212 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 6666 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 138406 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 333243 17374184 ~ 17381733 (-)
G37290 NA other upstream 392031 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 432969 17473910 ~ 17476878 (-)

Expression


Co-expression Network