LOC103030148 (csdc2,LOC105919973,LOC102235694)


Basic Information

Item Value
gene id LOC103030148
gene name csdc2,LOC105919973,LOC102235694
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17179347 ~ 17184427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50180
AGTCTCCTCAGTCTCCTGACCGAGCCGCGGAGGAGAATGGAGGGCATGATTAGCTCAGGAGATGGGGGACAGCAGCTCACTGACTGATTTCCTGGATGCTATGTGAGGATTGTGGCTGTGTTCAGTCGCTGCTGAGACTCTGAAGAGGACTATTATATTGGAGGACCGTTTCTAAACACGCCGCTGACGCCTGAGGCTTCAGAACTTCCTGATTTCTCCAAGCGATGGCTGACTCGGATacttcatcaccaccatctgAGCCCCCGCTGCACTGCCCCCGCACACCACTCTCGCTCTCCTTCCCCTTCCTGAGAGAGGGCAGTCGCGTCTGGGAAAAGAAACCTCCACAGCCTGGAGAGCCACCTAGTCCACTGCCTACCAAGCGTAACCGCACTTACTCAGCTACGGTTAGGGCCAGGTCTGGACCGGTTTTCAAGGGGGTCTGCAAGAACTTCTCCAGGTCCCAGGGCCATGGCTTCATCCGCCCTGCCCATGGAGGAGAGGACATATTTGTTCACATCTCAGACGTTGAGGGTGAATATGTGCCAATGGAGGGGGATGAGGTGACCTACAAAGTGTGCCCTGTGCCTCCGAAGAACCTGAAGGTCCAGGCTGTGGAGGTGGTCATCACCAACCTTACACCCGGTACGAAGCACGAGACCTGGTCCGGACAAGTGATCAGCTCCTAGCTCAGCCTTTAAACCCTGACAGAATGAAGAACAGACGTTTGGACGGGAAGGGTTCTGACACAAGAGAGGGAGAACGCTAGCATATGGAACAATAGATAGCTAAAGGGAGTAAATTAATATGTAAAAGGGGGCTAATGAGGACAAACTGGATGCAGGAGCTTGAAATGGCATTATGTGTAAGTAGGTTATGGATGGAATGGGAATTAGGGTTACGTAACTTCTGTTTCTGTAGCTTGGCAAATGTGGTGAAGGAACAAGCGTCAGTGGGAGGTCTCCTTTGGAACGAACTGGACTCTTGGCAAGGTCAACTGATCTGTGAATTGGCAGCAGcaacaatttaaacaaaagGTTTCCTCTGGGTAGCATTGACTCTGTCTGtgttgtcattttatttatttgtgtatttatttttatttcagggaactgagattttgtttttttaggggCACTTAAACCTAGAGTGAGGTCATCTTAGAGAGTGGCTCTTTCATTACATGTTTTACTGTTAAACAGAACTTTAAGGATCACTTAGATAAATAGTGctagttattataataaataataattttagaatTTTGCTTGTCACACCTTGTCCTCACACGTTTAACAGATAATGTGCATTAAGAAACATTACCCCACATTTGACTTGACTCTTGTGTTGATCATTGTGACCGTGTTTGTTTGATCATTACATGAAaggttctt
>XM_007251275.3
tcctcctcccgctCTGTCGTCGAGTCTCCTCAGTCTCCTGACCGAGCCGCGGAGGAGAATGGAGGGCATGATTAGCTCAGGAGATGGGGGACAGCAGCTCACTGACTGATTTCCTGGATGCTATGTGAGGATTGTGGCTGTGTTCAGTCGCTGCTGAGACTCTGAAGAGGACTATTATATTGGAGGACCGTTTCTAAACACGCCGCTGACGCCTGAGGCTTCAGAACTTCCTGATTTCTCCAAGCGATGGCTGACTCGGATacttcatcaccaccatctgAGCCCCCGCTGCACTGCCCCCGCACACCACTCTCGCTCTCCTTCCCCTTCCTGAGAGAGGGCAGTCGCGTCTGGGAAAAGAAACCTCCACAGCCTGGAGAGCCACCTAGTCCACTGCCTACCAAGCGTAACCGCACTTACTCAGCTACGGTTAGGGCCAGGTCTGGACCGGTTTTCAAGGGGGTCTGCAAGAACTTCTCCAGGTCCCAGGGCCATGGCTTCATCCGCCCTGCCCATGGAGGAGAGGACATATTTGTTCACATCTCAGACGTTGAGGGTGAATATGTGCCAATGGAGGGGGATGAGGTGACCTACAAAGTGTGCCCTGTGCCTCCGAAGAACCTGAAGGTCCAGGCTGTGGAGGTGGTCATCACCAACCTTACACCCGGTACGAAGCACGAGACCTGGTCCGGACAAGTGATCAGCTCCTAGCTCAGCCTTTAAACCCTGACAGAATGAAGAACAGACGTTTGGACGGGAAGGGTTCTGACACAAGAGAGGGAGAACGCTAGCATATGGAACAATAGATAGCTAAAGGGAGTAAATTAATATGTAAAAGGGGGCTAATGAGGACAAACTGGATGCAGGAGCTTGAAATGGCATTATGTGTAAGTAGGTTATGGATGGAATGGGAATTAGGGTTACGTAACTTCTGTTTCTGTAGCTTGGCAAATGTGGTGAAGGAACAAGCGTCAGTGGGAGGTCTCCTTTGGAACGAACTGGACTCTTGGCAAGGTCAACTGATCTGTGAATTGGCAGCAGcaacaatttaaacaaaagGTTTCCTCTGGGTAGCATTGACTCTGTCTGtgttgtcattttatttatttgtgtatttatttttatttcagggaactgagattttgtttttttaggggCACTTAAACCTAGAGTGAGGTCATCTTAGAGAGTGGCTCTTTCATTACATGTTTTACTGTTAAACAGAACTTTAAGGATCACTTAGATAAATAGTGctagttattataataaataataattttagaatTTTGCTTAAACTAAATTCTGATAATTTGTTGGTGCAAAGCACTTCAACATTCGTTTTGTCACACCTTGTCCTCACACGTTTAACAGATAATGTGCATTAAGAAACATTACCCCACATTTGACTTGACTCTTGTGTTGATCATTGTGACCGTGTTTGTTTGATCATTACATGAAaggttctttttaaataaattctttCATGATGTAACATTT

Function

symbol description
csdc2 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: cold shock domain-containing protein C2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50180 False 1394 TUCP 0.47 5 17179378 17184405
XM_007251275.3 True 1497 mRNA 0.46 4 17179347 17184427

Neighbor

gene id symbol gene type direction distance location
LOC103043322 NA coding downstream 9469 17148541 ~ 17169878 (-)
trnal-uag_1 NA coding downstream 84021 17095245 ~ 17095326 (-)
LOC103032763 snu13,nh2l1,snu13b,LOC105898651,LOC105031476,LOC105910236 coding downstream 111365 17065403 ~ 17067982 (-)
LOC103037732 NA coding downstream 285830 16875022 ~ 16893517 (-)
exoc6 exoc6,LOC107654070 coding downstream 313253 16798517 ~ 16866094 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding upstream 3240 17187667 ~ 17198837 (-)
LOC103028774 NA coding upstream 19905 17204332 ~ 17212783 (-)
LOC103028243 LOC108431941,LOC107584177 coding upstream 29169 17213596 ~ 17232139 (-)
LOC103027309 NA coding upstream 88946 17273373 ~ 17288832 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding upstream 134779 17319206 ~ 17325915 (-)
G37217 NA non-coding downstream 57146 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 63339 17112502 ~ 17116008 (-)
G37213 NA non-coding downstream 68638 17108712 ~ 17110709 (-)
G37206 NA non-coding downstream 87296 17091742 ~ 17092051 (-)
G37191 sun1 non-coding downstream 138406 17036556 ~ 17040941 (-)
G37237 tnrc6b non-coding upstream 56749 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding upstream 57293 17241720 ~ 17247453 (-)
G37254 tnrc6b,LOC107690060 non-coding upstream 151164 17335591 ~ 17337322 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding upstream 201414 17385841 ~ 17390421 (-)
G37298 tmem101,LOC107720276 non-coding upstream 304458 17488885 ~ 17494415 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 116400 17047607 ~ 17062947 (-)
G37183 NA other downstream 160429 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 264062 16913570 ~ 16915285 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 1338831 15837105 ~ 15840516 (-)
G36677 NA other downstream 1404754 15747400 ~ 15774593 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 189757 17374184 ~ 17381733 (-)
G37290 NA other upstream 248545 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 289483 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 350276 17534703 ~ 17689384 (-)
cntd1 NA other upstream 508070 17692497 ~ 17705023 (-)

Expression


Co-expression Network