G37274 (tomm22,LOC107554024,LOC107584213,LOC107692102)


Basic Information

Item Value
gene id G37274
gene name tomm22,LOC107554024,LOC107584213,LOC107692102
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17385841 ~ 17390421 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50244
tttgttttcctttattCCTTTAGACATGTTGAATATACAAAGACCTTCTTGGGAGAGATTGACATGAAAAATTGCCATTATATAGTTTTGATGTTAAAGAATTTATACAAATGCATAAAACTCAAATGCAGTGTCCTTACAAAGCTTAAACAATGTACAGGTTTAGCATTACAAGCACATGCAAACACTTAAGTTTACTTAACAAGTGTTTATAAGTCCGTGTTTCCACTAGGTCAGTAAGTCTGACACTAACATCATGCTTGTGACAACTCTTTTGTTCCTCTTTCCATGAAAAACAGTTACAAGCCATAAATGTTGTGCAGTTGCTAAACCTGATCCATGTGAACTTTAATGTGATCCATTACTCATTGTATTGCATGTATGGTGTTTCCTTTAGATGATGACAAAGGGGAATTCCAACATTTTTACTAAATGTCTGCATAATTCAATCCCTAAAATAACAACTTGGTGGTTTGATATGACCGTTAAGCATTGAAAGTATGGATCTCAAGGTCTCCAGCAGGAAAGAACTATGTATTTGTAACCCTTTCTTGCAATATCTTGGTGCTGTAGCTGACTCCAATTTCTGTCTTACAAGTGGAGCAGTTTATATAAAACCAGTATGTGTCATTAGTAAGTGTTAATATGTCACTAATGAAAGTATGCTTAGATTACGTAAAAGAATGTGTGGAATTCCCCTTTACAAAACATATTTGTAAAGGAGactgttggtaaacagtaatttTACCAAGCTTTAACACTTACAAGCAGGACAATCGCAACAACTAAACATGTGAATGTTTGAGTCTTTCAGAGCTGGTCTTTGTAATCCATTAAGAAAATGTTCATAACGAACATTTATAATGCAACACCCATTTAAACATGTTAACATGAACATCTTACTGCAGACAAACTTGCTTTTACTAAAGAATGAGAAATACCCATTTTACTTTCAGAAAGAAATATGAGAGATGTAATGACAcagctataaaataaaaaaaggaactcAAACTGTCAGTGCTCAGAAGTGTAGGCTGgacacagagtgagagagatatagaaagaaacacattttgCTGCTCTTCAGAAAGGACACATTTCCTCCCATGTTCAACCAATTAAGTCCTGCAGTGTGTTGACCGACATCCACCTCCTCGTTCTCTCCCCCCCAGTTCgccctctctctgtgtttcttttccAGGTCCCCTGTGAACTGCAGCGTAAAGACAGTGCTGGACATTTTTCTTCAGAGCTTTCCAGGAGCAGGGGGCATCATTCCGGACATTCCTCCAGACATGCCAGCATTTGGGCCCAACAGAATCTGTCTCTGTTGTTGTAGCTGTTGTTGTTCAAGCTGTAGTCGCTCTGTTTCAAACACAACTGGAAGAACCAGAATCATAAAGGAAGTGGTGCCCACCCACAGTGCACTGCGGGAAAAACTGTAAAGTTTCTTGGCTACAGACAGTGAGCACTGTGCAGATACTTCAGCTGCTGACCGCAGGGTGTCTGGAAACATCTCAGTCAGTCCCCACAGCCTCTCCAGCATGGTCTCATCCAGCTCTTCGTCTTCATCGTCTCCTTCGATGTCTTCCTCATGAGGCCGTGTGTCCACAGGCCCCGCGTCTGGAGACAGCGCCTGCATCCCCgcacacacagctcacacacactgatctcaCACACTCCCACTAACCCGCGCTAAGACCAGCGCAGCGACAGTTCACACAGCGCAGCTACGGGGCGATGCGGTCGCCTGTGTGTTTTAGAGCTGTTGGCAGGCGATGAATCTGAACTGCGGAGCTCCAGCCGGAGGTCAACTCGGTTACATGTGCGCGGAGTAAAGCAGGTCCTCACAGCGGCTCTGCGCTGGGGAACCGCCAGCAGCGCCCCCTGTACCAGGAGAGGAC

Function

symbol description
tomm22 Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in EVL; digestive system; epidermis; notochord; and periderm. Orthologous to human TOMM22 (translocase of outer mitochondrial membrane 22).

NR:

description
mitochondrial import receptor subunit TOM22 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50244 True 1904 lncRNA 0.43 4 17385841 17390421

Neighbor

gene id symbol gene type direction distance location
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 59926 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 97009 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 153702 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 173058 17204332 ~ 17212783 (-)
LOC103029821 aco2,LOC108273913,LOC107692062,LOC107554054,LOC107731401 coding downstream 187004 17187667 ~ 17198837 (-)
rsl1d1 NA coding upstream 24654 17415075 ~ 17421795 (-)
LOC111192420 NA coding upstream 40585 17431006 ~ 17438492 (-)
LOC111192380 NA coding upstream 52220 17442641 ~ 17466671 (-)
LOC103024821 LOC108425935 coding upstream 110048 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 119539 17509960 ~ 17517710 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 48519 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 58245 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 138388 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 263640 17121775 ~ 17122201 (-)
G37215 NA non-coding downstream 269833 17112502 ~ 17116008 (-)
G37298 tmem101,LOC107720276 non-coding upstream 98464 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 163151 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 315313 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 736113 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 736833 18127254 ~ 18127560 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 4108 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 201414 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 322894 17047607 ~ 17062947 (-)
G37183 NA other downstream 366923 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 470556 16913570 ~ 16915285 (-)
G37290 NA other upstream 42551 17432972 ~ 17466024 (-)
LOC103025140 NA other upstream 83489 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 144282 17534703 ~ 17689384 (-)
cntd1 NA other upstream 302076 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 399530 17789951 ~ 17795988 (-)

Expression


Co-expression Network