lsm12 (lsm12,LOC107708984,LOC107693683,LOC107562026)


Basic Information

Item Value
gene id lsm12
gene name lsm12,LOC107708984,LOC107693683,LOC107562026
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17509960 ~ 17517710 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239748.3
TGGCCCGCGAGGGAATGTGTTGAAGTGGGTGATCTCCGCTGCGGAGGTTCTCCGGTTTGTGTCCGCCGTAAAGCGCCGCTCTCCGGGTTTCCCTGGCGGAGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGCGTGGGAAGCAGCGTCTCCTGCCTCACCTGCCTGGGCCAGCGCCTGCAGGGAGAGGTTGTGGCCTTTGATTACCAGACCAAGATGTTAACTCTGAAATGTGCTTCTTCCAGTGGCAAGCCCAACCTCAGTGACGTCATCCTGGTTAACTTAGCCTACGTTTCAGAGGTGGAAATCATTAATGATCGTACTGAGACACCACCTCCTCTAGCATCTTTGAATGTGGGCAAGCTTGCCAGTCGGGCGAGGACGGAAAAGGAAGACAAGTTATCCCAAGCCTACGCAATCAGTGCTGGGGTTTCAGTTGAGGGCCAGCAACTATTCCAGACTATACATAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATTATTGTGATGGATGACGTCGTAATCTCACCGCCGTATCAGGTGGAGAACTGCAAAGGAAAAGAAGGAAGCGCTTTAAGTCATATACGCAAAATCGttgagaaacattttaaagatgTGGAATCTCAGAAGTCGATGCAGCGTTCACAAGCACAGCAAACACAGAAGGACTCGTCGTTATCTTCCTGAGGGGGGAAGGGGCGAGCGTGGTTCGGCCAGAGAGGGCACCACGGGCATCAGCGCTCTGAGAGCCGGACGAGAACGGCGCTCCCCTCTCTCCTACCCCTCCCCTTCAGCGCCGCAGTCGGAGGGCGGGGGATACCAAGACCCCAGGGTCTGCAAgatcaaacaaaaacaaatgaaaaacattaaaaaaaaaaaaaaaaaaatcagaaaaagtgaGGGTGCAAAGAGTTAATTCTAAAATTAGATTTATAAAGATAATTTAAAATACCAATTATTAAGAAACCCATAGTTTTCCTGACTAACTTCcatcatctttctctctctctatctctctctctatctctctctatctctctctttctctctggcccTTCTTCCTCCTTCTCTCCTATTCTTCTCTCCTTTCATTTTCATCCCTCCTTCGCCTTCTATTCCATTCtgtcaaaaaaggaaaaaaaaaacaaacagtcaGAAAAGCTTGTtagctttttgttttcttcccccaaattttccttttttgccATCTTCATGTTCATGtgtctgtattttctgtattttaaacaaaaatgtgactTGAAATGCCACACTTTAAAAAACGGACGTTTTCTAAAATAAAGGAACAAAAATTCTGACTGTAA

Function

symbol description
lsm12 Orthologous to human LSM12 (LSM12 homolog).

NR:

description
PREDICTED: protein LSM12 homolog A isoform X1

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239748.3 True 1330 mRNA 0.46 5 17509960 17517710

Neighbor

gene id symbol gene type direction distance location
LOC103024821 LOC108425935 coding downstream 5143 17500469 ~ 17504817 (-)
LOC111192380 NA coding downstream 43289 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 71468 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 88165 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 184045 17319206 ~ 17325915 (-)
wnk4 NA coding upstream 193290 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 286024 17803734 ~ 17820280 (-)
maz maz coding upstream 305048 17822758 ~ 17836906 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding upstream 321717 17839427 ~ 17872154 (-)
LOC103022355 NA coding upstream 386494 17904204 ~ 17918797 (-)
G37298 tmem101,LOC107720276 non-coding downstream 15545 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 119539 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 172638 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 182364 17241176 ~ 17327596 (-)
G37309 NA non-coding upstream 35862 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 188024 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 608824 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 609544 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 620239 18137949 ~ 18139122 (-)
LOC103025140 NA other downstream 33082 17473910 ~ 17476878 (-)
G37290 NA other downstream 43936 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 128227 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 325533 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 447013 17047607 ~ 17062947 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 16993 17534703 ~ 17689384 (-)
cntd1 NA other upstream 174787 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 272241 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 764780 18282490 ~ 18317957 (-)
G37603 NA other upstream 1054981 18572691 ~ 18573176 (-)

Expression


Co-expression Network