LOC103025753 (LOC108425979,LOC108274047)


Basic Information

Item Value
gene id LOC103025753
gene name LOC108425979,LOC108274047
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17534703 ~ 17689384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50318
ctctctctctctctctttctttttcgcTCTTGCTCTCGCGctacctctccctctccctcctcaCCATTCCACAATTCCAGCTCCGACGCTCCACAGTTTTTCATCACCATTCTGCTTCATGGTGCTGGTCTAGGACGTGCCAGTCGGCCACCAATCGGTGGAACCGCCTCCACCGAGGAGCGAGGCTTTGCCCGGAGGAAGATGAATGAGGAGAAGGACTGAAGTCCAAGGTCTGTCTTTCTGCTCCAGGCAAGAAAGAAGAGGTCTCCTTGACTTGACGTCTCTCCACCTTCAGTCGTTGTCCATCCGCCCATCTCTCCTCCGTCTCTCAGGGTCGCTCTCGCTCTGCACTGGCTTTTGATCGCGTGGACCTGCGTATCAGCATCCGTCGGAAGCTCTGAccggagggtgtgtgtgtgtgtgtgagtgtgcttgTGTGCTTGTGTGGGCGCACAGCGAAGTGTTGTGGATGAGCTGGCCATCGTTGAGGCGGCTGCAGGggctgtgtgtgtctctggaCGGAGAGGGCGACGGACGAGAGCTGGTGCCCTATGCCAGTCTGGCTGCCCAATGCGGGAACTGGTATGAGCATGCACCGGTGCGGAAAGCTAAGTTTGTGGAGAGCCCCCGCATCCCCGAGTCTGCACTCTGCTACACCACACACATTGCTCCCGCTGCACGGAACCCCCACCCGGATACACATTGGCCCGGTAAGACCCGGCCGGACCCCTCCTccatctatgtgtgtgtgtgtgtgtgtgtgtttaacattaACAGCATTAGATTCACATATATTGCTTTTCTCTTTATGTTCTCCTGCTCCCTAACATAGCTAGTAGCTAACATAGCGTAGCATTGTGCTTGGTTATGAGTGTTAAATATGTGCTGAGGGAgtgttatatatttaacaagacagctgattgtgt
>XM_022669440.1
TCATGACATTACAGTTGACCGAGGCAGAGAAGTGTCTGCGGCGGCGTCTCCGCGCTATATTACACTTTATTAACCTGAATGAAGCCGGTTTGGGACTGGTTTTCACACGACAGCGCCTTGTAGAAGCTCCGGGAGGGGTGGAATATTAGTCACGGATGAAGGCTGCCCGCTGCTTCGTCATGCATGGAGGCAGGAGGTGGACCAGTTAACCTGAACCTGCAGGCAGCCCACCACGGAGCACACAGTGTTTCTTTAGCCCCTTCCACCCTCTGCTACCATGTTTAGGAATAGCCTGAAGATGCTGCTGGGGGGCAAGGCCAACAGGAAGAGCCGCAACAGCAGCAGTGATGGAGGCAGCGAGGATCCCAGCGAGCTCAGGAGCGCCAGCCTGGACCCCCACCACAACCTGGCCGGCCAGGGTGGCAGTATAGACAGTGACTGTGCCTTCGAGGGCGAGTACGGCGTTCCCCCTCTCTCCATGGCTGAGGGGCTCCAGCACATACGAATCATGGAGGGCGTGTCTCGTTCTCTGCCCTCCTCCCCACTCCTCACTCACCAGACGGTCAGCCCCAGGATACCGCCGGTCAAGAAGATCAGTGGAGCAGCCACAGCACCGGTGCGGAAAGCTAAGTTTGTGGAGAGCCCCCGCATCCCCGAGTCTGCACTCTGCTACACCACACACATTGCTCCCGCTGCACGGAACCCCCACCCGGATACACATTGGCCCGGTAAGACCCGGCCGGACCCCTCCTccatctatgtgtgtgtgtgtgtgtgtgtgtttaacattaACAGCATTAGATTCACATATATTGCTTTTCTCTTTATGTTCTCCTGCTCCCTAACATAtggttatatatgtttgtgtgtattgcagGGTGTGGGTGTGAGCGGCAGGATGAGTCCGTGCTCCACGCTGACCAGCAGCACAGCGTCTCCTCCGGGCTGCAGCCCCTGCTCCACTCTGCCCCCCGCAGCTCCGGGACAGGCCCTCACCAGCCCCACCTCCACCCTGGAGAGCAGGGACAGTGGAATAATTGCCACTCTGACCAGTTACTCTGAGCCGGCGGACCGTAAGCACGGTGACGGCTCTCGGGCCAGCAGTCTGAAGCTGTGGCACTCTCACCGATCCACGCTGGACTCCAGCCTCTACCGAGTGGACGAGAACATGGCCGCCTCCACACACAGCCTCAACAAGATCCCTGAGCCTGGCTCCACCCACCACTCCTCTCATCCCACCCCCCTCTACCTCATGCCCCGCCCCAACTCTGTGGCAGCCACCAGTTCAGCTCACCTGGAGGACCTGGCCTACCTGGATGAGCAGAGACACACACCCCTGCGCACCTCACTGCGCATGCCCCGCCAGAACAGCATAACAGCCGGACGCTCCGGCCAAGACCTCAGAGtGCGGTTTGCTCCGTACCGTCTGCAGGACATTGCTCTGAAGCCGCTGCTCTTTGAAGTACCCAGTATAACGATGGACTCGGTCTTCACGGGCCGAGACTGGCTGTTTCAGGAGATCGACGCTCAGCTCGGCAGCACAGACCCAGACACCAACCACGGGGTGGTCCTGGTGGGCAACATCGGCTTCGGCAAAACCGCCATCATCTCTCGACTGGTGGCTCTCAGCTGCCACGGCAACCGCATGAGACAGATCGCCTCCGACAGTCCGCAGGCTTCGCCCAAACATGGAGATGGTCTCCCACTTACCCAGCCTCAGCCCACCCATGGAACTCTGGGAGGAGGCAGCTGCCCCGGGACGCCAGAGATGAGGAGGAGACAAGAGGAAGCCATGAGGAGGCTAGCAtctcagGTGGTGGCGTATCACTACTGCCAGGCGGATAACGCGTACACCTGCCTGGTGCCGGAGTTCGTGCACAATGTGGCGGCGCTGCTGTGCCGCTCACCACAGCTCAGCGCCTACAGAGAACTGCTGCTGAAGGAGCCACACGTCCAGAGCACGCTCAGCCTGCGCTCCTGCGTCCAGGACCCCCTCAATGCCTTCAGACGAGGGGTCCTCGAGCCGCTAGATGCACTTTATAAAGagagaaAGATCACTGAAGATGAAGACTTCATTATCCTCATAGACGGACTGAATGAAGCAGAATTCCACAAGCCTGATTACGGTGACACCATCGTCTCGTTCCTCTGTAAAACTATCAGCcggttcccagcctggctcaaACTCGTAGTGACTGTCAGAACCTCCCTACAGGAAATCACCAAGCCGCTCCCGTTCCACCGTATCTCTTTGGACGCCATGGAGGAGAACGACGCAATCGACCAGGACCTGCAGGGCTACATCCTGCACCGCATCCACAGCAGCGCTGAGATCCAGAACAACATCTCGCTCAACGGCAAGATGGACAACACCAGCTTCGGCAAGCTGAGCTCCCACCTGAAGGCCCTGAGCCAGGGCTCCTACCTCTACCTGAAGCTGACCTTTGACCTGATTGAGCGGGGATACCTGGTGCTAAAGAGCTCCAGCTATAAGGTGGTTCCCGTCAGCCTGGCCGAGGTGTACCTGCTGCAGTGCAACATGCGTTTTCCCACCCAGTCGTCCTTTGAGAGAGCCCTGCCCCTGCTGAATGTGGCCTTGGCCTCTCTGCACCCGCTCACTGACGAGCAGATCTACCAGGCCATCAACGCCGGATCCCTGCGGGGCACGCTGGACTGGGATGATTACCAGCAGAGACTGGAGAACCTGTCTGTCTTCCTGGTGAAGAGGCGGGACGGCACACGCATGTTCGTACACCCCTCCTTCAGAGAGTGGCTAATTTGGAGGGAAGAAGGAGAGAAGACCAAGTTCCTGTGTGATCCCAGGAACGGCCACACGCTGCTGGCCTTCTGGTTCTCCAGACAGCAGAACAAACTCAACAGACAGCAGACTATAGAACTAGGACACCACATACTCAAAGCACATATATTTAAGGGCCTGAGTAAGAAGGTTGGGGTCTCCTCATCCATCCTGCAGGGGCTGTGGGTGTCTTACAGCACTGAGAGTTTATCAACTGCTCTGTCCTCCCTCAGAAACCTCTACACTCCCAACATTAAGGTGTCCAGGCTGCTGATGATGGGCGGGGCGAATGTGAACTACCGTACGGAGGTGCTGAATAACGCTCCGGCGCTGTGTGTGCACGCTCACCTGGGCTACATGGACATGCTGaacctgctgctggagttcGGGGCCAGTGTGGACTCCCTGTCCGAGAGCGGAATGACCCCGCTGGCCTACGCTGCTGCTGCCGGACACCTGAGCATAGTGACCATGCTCTGCAAAAAGAGGGCCCAGCTGGATCACTTGGACAGGAACGGTCAGTGCGCTCTGGTGCACGCAGCTCTGCGGGGACACATGGAGGTGGTGAAGTTCTTGCTGCAGAGTGACTGGGGGGCTGGGGCGCAGCAGCTGCAGACGCCCTCACCCACGCAGCCGCAGTCGCAGCCCTCCAGCCCGGAGCAGGCGCAGACGGACACGGAGCCGGAGCAGAGcccggaggaggaggaaaggGAGGCTGAGGAAAGCCCGGAGCAGCCTGAGCCCAAGGATGAGTCCCAGCAGAACCTCCAGCAGCCTCAGCCTGCACAACCTCATCCTCAAACCCCACCTCAACCTCAGACTCCACCCCAGACTCAGACTCAGTCTCCACAGGCCTCCTTCAAAAAGAGCCTCGCAGTGCAGCAGGCCCTGGTAGCAGCAGCCAGTATGGGCTTCATAGAGatTGTGTCCTACCTGCTAGACCTACCTGAGAAGGACGAAGAGGAGACTGAGCGTGCTCAGATTAATAACTATGACTCTCTGTGGGGGGAGACAGCGCTGACCGCAGCAGCAGGGCGGGGGAAGCTGGACGTTTGCAGGCTGCTGTTGGAGCAGGGCTCTGCTGTGGCTCAACCAAACCGCCGGGGACTGGTGCCTCTCTTCAGTGCTGTTCGTCAGGGACACTGGAAGATTGTGGATTTGTTGCTGACTCATGGGGCAGACGTAAACCAGGCAGATAAGCAGGGTCGGACCCCTCTCATGATGGCTGCTTCAGAGGGTCATGTAGAGACAGTGGAGTACCTTTTGGCTCAAGGTGCATCAATGCCTCTAATGGATAAGGAGGGGCTCACTGCTTTAAGCTGGGCGTGTCTAAAAGGGCACTTGCCTGTTGTCCGCTCTCTGGTGGAGAGGGGCGCGGCCACTGACCACGCTGACAAGAATGGACGCACACCCCTTGACCTGGCAgccttttatggagatgctgatGTAGTGCAGTTCCTGGTGGATCAGGGGGCGCTGATTGAGCACGTGGACTACAGTGGGATGCGGCCATTGGACCGGGCTGTGGGCTGCAGGAACACTTCCGTGGTGGTGGCCCTCCTTAAGAAAGGAGCTAAGATCGGTCCAGCAACGTGGGCGATGGCGACCTCCAAACCAGACATCATGATCATCCTGCTGAGAAAACTCATCGAGGAGGGGGACGGTTTCTATAAGAAAGGGAAAGTGAAGGAGGCCGCCCAGCGTTATCAGTACGCTTTGAAGAAGTTCCCGCGTGAAGGCTTCAGTGAAGACTTAAAGACCTTCCGAGAACTCAAAGTATCTCTGTTCCTCAACCTGTCTCGCTGCCGTCGGAAAACGAACGACTTTGGGATGGCGGAAGAGTTTGCTACCAAAGCTCTAGAGCTGAAACCCAAATCGTACGAGGCTTACTACGCTAGAGCCCGTGCTAAACGCAGCAGCAGGCAGTTTGCTGAAGCTCAAGAGGACCTCAGGGAAGCCATAAAGTTGTGTCCCAATAACCGAGAGATCGTGCGGCTCCTGCAGCGTGTCGAGGAAGAGTGCCGGCAAGTCACCCAGACAGAAGAGCCGGAGCTCGAGCCCCCACCGtcccctcctccttctcctttaCCTGTGGAAGAGGACGAGGAGCCCCCTCGTCACACCCCTCCCCCGGAACCACGGCTGGATGACATGGAACCAGTTCAGGATCTGTTCGAGGACGACAACTTCCTAGAACAGGAGCTGGAGGGAGTGTCCATTGGCCTTCCCCCAGAACCACGTGTTAACCCATCGAGCCTGCCTATCATACACAGCCCTCCCCTCTCTCCTGTCCCTCACGAGGCTGCCTACCTAACAGGAGGCCAGGAATTTGATTTCCACCCCAGCTCAACCTCAAtgtcatccccaactcatcagaGCTACCAGTCCACCTCACCATGCATCTCACCTACACACCAGAACTCCTATTACTGCCACAGTCCTCCACACACCTCTCCAGCCCACCAGGCCTCCTACCGCTTCAGCCCTCCTCCTATGGGTGGTGGGGGTCAGGGGATGGATTACCAGAGTCCACCACCTTCCCCTCTTCGGCGTGGAACCCCATACAGAGCCAGCCCACCCATGGAGAGCGTATGTCTCTACCGTTCCCAGTCGGGATCTCCAGTGCGCTACCAGCAGGAGCCTTTGCCCAGCCGCCCCAAGTCACCCCTGTCCAAGATGAGCAGTCAGCGCTCCTTTCAGCTCCAGTCCCAGCCATCCCAATGTTCACAGTCCTCTCAGCACCATCAGGCTCAGGGGCACCGGCTGCAGCCCTCTGTGGCTCAGATTGTGCGCACCAGCCAGCCTGGGACCGGAGTCTACGGCCAGCTGGCCCACCCACTCAGCAGCAGATACCAAGGCAGCTCCATGGATGTTGACCGGGAGAGGGAGCGTGAAGCCCGGCTGGTGTACCAGCCTTCCCTGGATGGAAGGTCCATGTCTCAGGTGCAGTCAAGCCTGAGTGTGGGTGCCCTTTGCCAACACGACAGGCGTGGAGGACCCGGTGGAGTCCTTGAGTCAAGTGTGGGAAAAGACGAAGCCCCTCAACGTCCAGCTTCAGCTTACCGCTCTACGACTGGCGGCCCAGGAGGCATGCGCTTCAGTCAGACACCCCAGATAAGCCGCAGCCAGTCGGCGGCTTACTACCCAGTCTCCAAACATGAGCTGGAGAGAGCTGTGGCAGCATCCTCTATGCCCCCATGTCAGCTAGGCTCACCTGAGATTCCACACCTGGTGCGTAGGCCCATCAGTGCCAACACAGGAGATCTGAAGCAGCACGTGCCCACCCCTAGACCCCTCATCCACTCTCAGAGCGTGGGTCTGCGTTTCTCTCCCTCCAGCAGCAACATCTCCTCAGGCTCCAGCTCTAACTTAGGTCCCGGCTTCAGGCCATCCTCCTCCATGGCCCAGATGGAGATTCCGCTGCAGGTGGCGTACGAGCGCAGCTTTGACGAGCCGTCCTCGCTCTCACCCTCGCAGGGTGGCCTGTACCCCAGCGAGCCTGCCCGCTCCAGGACCACACCCTTCATGGGCATCATCGACAAGACGGCACGGACTCAGCAGCAGTACCTGCACCAGCCATCGCGTGCCTGGCCTGTGACGCCCCTGGACAATGTCATCACCAGCCCAACGTCACCCGGGAACCTGATACACCAGGCATCCACCGCTTCTTCCTACAGCCCGCCCACCTCGCTAGGCAACATCGCCTACTACAACAAGACCAACAATGCACAAAATGGCCACATGCTGGAGGATGAGTACTACGTCCAGCCGCAGCCCTCCTCTCTGGGGAAGCTGGCTAACGGAGGAGCCCGTGACCGGGATCTGTTAGAGCGGGTTAGCCAGGTGCCCACGTACCAGGATGTGAAGGTGGCACGGACGATGCCTGTTGCACAAGCGTACCAGGAAAACATGTACCGCCAGCTCTCGCGCGATGCCCGGCAAGGCCCCACCTCGCCCATCAAACCAAAGAGACCTTTTGTGGAGTCAAATGTGTAACTAGGCCAGTGCGGCGTGaaaagagtgtgagtgtgtgaggaagagagtgagtgaatgagtaaaTGAGTATAAGTTGGCGTGTTGTTGTGACCTGGTGGGTTAAGGTAAAAACAGGCAATTAAAACAAGTCAGTATTTAAAACTCTACCAAACCAGGGAGGGTAACGTTGATGCATTGCAGCTTCGTAGAGGATATCGCTAATACAGCTCTGATCTGTGCCTATTTCAGATATATTTGGGGCATAAGCTTGTTTTAGTATTGAGGTTACATTTTAGCACTAGAGCGAATGACTGGGATTTTACAATTCCTTGAATATGATACTAACTACTGAATGTTCTTTACAGCTCTGCACATTATGTGAAAGCACATTACTGAACCTTCCATGAATCAAAGCCACAAGCGCTCGCACGCACAGAttgaggaagtgtgtgtgttgcagttcTTACCCAgtgtgaatgagtgagagagagagagagagagaaagagagtgtctAAAGTGGACAGGACTGCACGAGTCAGGGACTCTTTGTGAATCTGCGTGCGCTCAACTCCTTCCCTCGCTCCGCTAGTTGATTCAGAACAGGACTGCTAGACCTTCCACGCTAAAAAGCGCCGGATTACTCAACGCTTATGTCTTATAAAGGAGACAACCTCGTAAACAGTCAGAAATAACTAAACCACTAAGCTGTAGTTGCAGAAGGAAAACAAAGGAATATTTATAACAGAGGTAGATTATGTATA

Function

NR:

description
PREDICTED: protein TANC2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50318 False 926 TUCP 0.54 3 17584050 17653785
XM_022669440.1 True 7534 mRNA 0.57 28 17534703 17689384

Neighbor

gene id symbol gene type direction distance location
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding downstream 16993 17509960 ~ 17517710 (-)
LOC103024821 LOC108425935 coding downstream 29886 17500469 ~ 17504817 (-)
LOC111192380 NA coding downstream 68032 17442641 ~ 17466671 (-)
LOC111192420 NA coding downstream 96211 17431006 ~ 17438492 (-)
rsl1d1 NA coding downstream 112908 17415075 ~ 17421795 (-)
wnk4 NA coding upstream 21616 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 114350 17803734 ~ 17820280 (-)
maz maz coding upstream 133374 17822758 ~ 17836906 (-)
taok2 taok2b,LOC107693686,LOC108273910,LOC107562015,LOC107708977,LOC107571768 coding upstream 150043 17839427 ~ 17872154 (-)
LOC103022355 NA coding upstream 214820 17904204 ~ 17918797 (-)
G37298 tmem101,LOC107720276 non-coding downstream 40288 17488885 ~ 17494415 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 144282 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 197381 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 207107 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 287250 17241720 ~ 17247453 (-)
G37333 LOC103045739 non-coding upstream 16350 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 437150 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 437870 18127254 ~ 18127560 (-)
G37449 NA non-coding upstream 448565 18137949 ~ 18139122 (-)
G37450 NA non-coding upstream 451408 18140792 ~ 18141076 (-)
LOC103025140 NA other downstream 57825 17473910 ~ 17476878 (-)
G37290 NA other downstream 68679 17432972 ~ 17466024 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 152970 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 350276 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 471756 17047607 ~ 17062947 (-)
cntd1 NA other upstream 3113 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 100567 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 593106 18282490 ~ 18317957 (-)
G37603 NA other upstream 883307 18572691 ~ 18573176 (-)
G37616 NA other upstream 944194 18633578 ~ 18635098 (-)

Expression


Co-expression Network