G37290


Basic Information

Item Value
gene id G37290
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 17432972 ~ 17466024 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU50265
CACGTTTGTAATGGAGattctttgttaaaaaaaaaataggattagTCCTAATCCACGCCTGAGAAAATAACTAGTAAGTATTGCAGCAGTACTCTTACTTCACAGGAGATATTTGTTTGAAAACAAAAGGgttaaaatgttgacacacacaACAAGAAGCTGTCCAATTAGAGatatttattctgtgttatctGGGTAGATCCAACCTAATGGTCCGTGCTTCCATGAAGCTGGAATGAAGATCTTATGCTTTTAATAATTAGGAATTGagaaatcagccaatcacattttgGTGATCTGCAGTGGGAGTGATTGGTTGAATAAGAAAATTGTCCTTCATTTTTGGGGTAAATGTAGCTATAAATaaggacaaatatatatatttttggagatGCCATTCAATAgctggaattaaaataattagaaaaatcACATAACATGAAATCACATAGAATAAATCATATTCCGGCAAGCTGAGATTGGTGTGATTGTTTGAAGTAGTAAAACTGTCACTCTAGTCTATTTGGAGGTTCTCGATAATAGATACACCACTGGCTGTAAATATGAGCGACAAACCACATGTATTCTACTAAAAGCACTGTGTAAAGCACTGGTTTCCTCAGTTTTTTCACCATGGCCTGTTATCTGTACTGTTAATTCTATATAACAGTAAAACAGTGCACAAAAGTCAGAGAAAATACCTTTAGCACTTGTAATCAATGAAAGGTACATATGTAGCTCAACATGTTTTGAGCCATAATCTGTGTTAAGGCAACTCCTCctccttttacattttcacagaCACCACATCTGGTCTGAAGCTCACACCTTCTGGCAACAGCCTGGAAAACTACTGGGAAAGCATCTTAAGCATCAGCCACCCTGCATCTTTAGTACCTCTGTTCTTTTAGCTGCAGCAAAACCAATTAATCCACTTCAAGATGTGGCTGCTGGTGTTTCTGGTGTGGTTCCTGAGCTGGGCAGGTGGAATGTACTGGTATTTCTGTGGCAGACCGAGCCCTTTCTCAGAGGACTGTGTAAGACCTGCAGGACCAATGGAGCTTAACCAGAAGAAAAGAGACAAGGTTCTGAAGCAAGGCTTTGCCAAGAAGAAAGTGGCCAAGGATTTGGATGCAATCGTGATTGGCAGCGGGGTCGGTGGGATGGCAGCAGCGGCTACAATTGCCAAAACTGGCAAGAAAGTTCTTGTGTTGGAGCAACACGACCAGGCTGGAGGCTGCTGCCACACCTTTATCGATAAAGGTTTCGAGTTTGATGTTGGGCTTCATTACGTCGGTCAGTTGCACGAGAACAGTTTGTTTAAGATCATTTTTGACCAGATCACTGAAGGCCAGCTGGAGTTTGCAGAGCTCGACCAGCATTTTGACACGGTCGTGATTGGCACAGGAAAGGAAACTAGGGAATACACTATCTGCTCCGGCAAAACTGAAATGGAGGAACATCTTAAAAAGCAGTTTCCTGATGACACCGAAGCCATTGAGGAATTCTTTAAGATCATGAAGTTGTCAGCTAGGAAGACTCCCTACTTGGCTGCAATGAAGCTGATTCCAGAGTGGCTGGCATTGTTCCTAGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCGGCTGTTAAGCATGAATGCTACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCGTACTACTTCTATGGT
>TU50267
AAAACAGtctgtttaagatcatttttGACCAGATCACTGAAGGCCAGCTGGAGTTTGCAGAGCTTGACCAGCATTTTGACACGGTTGTGATTGGCACAGGAAAGGAAACTAGGGAATACACTATCTGCTCCGGCAAAACTGAAATGGAGGAACATCTTAAAAAGCAGTTTCCTGATGACACCGAAGCCATTGAGGAGTTCTTTAAGATCATGAAGTTGTCAGCTAGGAAGACTCCCTTCTTGGCTGCACTGAAGCTGATTCCAGAGTGGCTGGCCCTATTCCTGGTGAGGAGTGGTCTTGCCAACCTCTATTCCTCTGCCTTCCGGCTGTTAAGCATGAATGCTACAGATCTGGTCGAGAAACTGACCTCCAACAAGGACCTCCAAGTTATCTTTGCGTACTACTTCTATGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50265 True 1721 TUCP 0.42 4 17432972 17466024
TU50267 False 413 TUCP 0.46 3 17432972 17463317

Neighbor

gene id symbol gene type direction distance location
rsl1d1 NA coding downstream 11177 17415075 ~ 17421795 (-)
LOC103025298 LOC103025298,LOC108273827,LOC108431982,LOC107690061,LOC107584211 coding downstream 107057 17319206 ~ 17325915 (-)
LOC103027309 NA coding downstream 144140 17273373 ~ 17288832 (-)
LOC103028243 LOC108431941,LOC107584177 coding downstream 200833 17213596 ~ 17232139 (-)
LOC103028774 NA coding downstream 220189 17204332 ~ 17212783 (-)
LOC103024821 LOC108425935 coding upstream 34445 17500469 ~ 17504817 (-)
lsm12 lsm12,LOC107708984,LOC107693683,LOC107562026 coding upstream 43936 17509960 ~ 17517710 (-)
wnk4 NA coding upstream 244976 17711000 ~ 17784278 (-)
LOC103047174 fam57b,fam57bb,LOC108274141,LOC106583943,LOC107578766,LOC106579402 coding upstream 337710 17803734 ~ 17820280 (-)
maz maz coding upstream 356734 17822758 ~ 17836906 (-)
G37274 tomm22,LOC107554024,LOC107584213,LOC107692102 non-coding downstream 42551 17385841 ~ 17390421 (-)
G37254 tnrc6b,LOC107690060 non-coding downstream 95650 17335591 ~ 17337322 (-)
G37237 tnrc6b non-coding downstream 105376 17241176 ~ 17327596 (-)
G37238 pdap1a,LOC103027934,LOC106609414,LOC106589537,LOC105025093,LOC107554049,LOC108431950 non-coding downstream 185519 17241720 ~ 17247453 (-)
G37217 NA non-coding downstream 310771 17121775 ~ 17122201 (-)
G37298 tmem101,LOC107720276 non-coding upstream 22861 17488885 ~ 17494415 (-)
G37309 NA non-coding upstream 87548 17553572 ~ 17555922 (-)
G37333 LOC103045739 non-coding upstream 239710 17705734 ~ 17708605 (-)
G37443 NA non-coding upstream 660510 18126534 ~ 18126807 (-)
G37444 NA non-coding upstream 661230 18127254 ~ 18127560 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other downstream 51239 17374184 ~ 17381733 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other downstream 248545 17179347 ~ 17184427 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other downstream 370025 17047607 ~ 17062947 (-)
G37183 NA other downstream 414054 17016128 ~ 17018918 (-)
LOC103043629 LOC108412394 other downstream 517687 16913570 ~ 16915285 (-)
LOC103025140 NA other upstream 7886 17473910 ~ 17476878 (-)
LOC103025753 LOC108425979,LOC108274047 other upstream 68679 17534703 ~ 17689384 (-)
cntd1 NA other upstream 226473 17692497 ~ 17705023 (-)
vps25 vps25 other upstream 323927 17789951 ~ 17795988 (-)
LOC103047479 LOC108441156 other upstream 816466 18282490 ~ 18317957 (-)

Expression


Co-expression Network