G36677


Basic Information

Item Value
gene id G36677
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15747400 ~ 15774593 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49392
ttttttcttttacagtgttgtgtCCAAAATACTGCCAGGTACTGAGAGCGCATATCAGCTCCGTCTGGTGACCTACTCCGATTCTTCATTCATTACTCCCTATTCCGGAAATATTACAATTGAAGTAAACCAGCAGGTCTTCATAGCTGTGGAGGCTGATGGAATTGACAGTTCACAGTTTGCTACTGTGCTGGACAGCTGCTGGGCCACTCCCTACAACGACATCAACTATCCTGTTCGCTGGGATCTGATCATTAATGAGTGTCCTAATGAGAAAGATGGCACAGTGGATGTGCTGCAGAATGGAATCTGGACAGCCAGTCACTTCTCTTTCAGGATGTTCACCTTCACTGGCATTTCTAACAACATCTTCCTGCACTGTCAGGTGCACCTGTGCCCGCGGATGAGTGGTCAGTGCTCTCAGCCATGTAATAAAAATGACGACGATGATCAATTCAGAGGAAGACGTCGCAGATCTGTGGACTTCCACGACAAAGCTTCTATCAGCATGAGCTTCTAACTCTCTGGCCCTTTGAAACCTCTGTTTGTGTAACATGGCCTAgaccaggggtctcaaagtagcggcccgcgggccacatgcggcccgcgacgcggtttcatacggcccctcacgggttt
>TU49397
CGTACAGCAGGCAGGGAACTGCACTAGACACAAAACTGGTGGCTTGCAACCTGGTTTGATTCTCAGGATGGGGTATCCACCTTCACTGTGTTTGGCTGCCCTGCTCTTCCTGAACATAGTCACCACAAATGGACTCCCCGCAACCACAGTTCAAACCACAAATTTGATGGGTACCACCACTGGAAACCGCACAACCACAGTTCAATCCACAGGGTTAACAGGCACCACACCTGGAAGCCCCACAACCACAGTTCCATCCACAGTTTTTACAGGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTAACAAGCCCCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCACCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAaGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACaag
>TU49403
CAGGCACCACAACTGGACGCCCCACAACCACAGTTCAAACCACAGGTTTGACGaGCACCACAACTGGACGCCCCACAACTACAGTTCAATCCACAGGTTTGACAAGCCCGACAACTGGAAGCCCCACAACCACAGTTCAATCCACAGTTTTTACAGACACCACAACTGGACGCCCCACAACTACAGATCAATCTACAGTTTTTACAGCCTGTTCAGCTTTGAACTGCACTGCCAGAGAAGAGTGCAAGGCGAGAAGTGGAATTTATGGCTGTGCCTGTGCGAACAACAATCCAAGATTTAATGCTGCcacttttgATGCCTACAACTACTGTAACAGCAGTTCTGGGGTGCTGTCACTCTCTCGCTGTGAGCTCTTCGAGGCTGGATTTCCTTCAGACTTCCTTCACCTCAATGATCCTAGTTGTGGAGGGGATATCCAAGATGACAGAGTGGTGTTCACTTTCGACAACAGGTTTAGGATCTGTGGCACAACAATGAAGtgttgtgtCCAAAATACTGCCAGGTACTGAGAGCGCATATCAGCTCCGTCTAGTGACCTACCCCAATTCTTCATTCATTACTCCCTATTCCGGAAATATTACGATTGAAGTGAACCAGCAGGTCTTCATAGCTGTGGAGGCTGATGGAATTGACAGTTCACAGTTTGCTACTGTGCTGGACAGCTGCTGGGCCACTCCCTACAACAACATCAACTATCCTGTTCGCTGGGATCTGATCATTAATGAGTGTCCCAACGAGAAAGATGGCACAGTGGAGGTGCTGCAGAATGGAATCTGGACAGCCAGTCACTTCTCTTTCAGGATGTTCACCTTCACTAACCTATCTAACAGAATCTTCCTGCACTGTCAGGTGCACCTGTGCCCGCGGATGAGTGGTCAGTGCTCTCAGccatgtaataaaaatgatgacgATGATCAATTCAGAGGAAGACGTCGCAGATCTGTGGACTTCCACGACAAAGCTTCTATCAGCATGAGCTTCTAACTCTCTGGCCCTTTGAAACCTCTGTTTGTGTAACATGGCCTAGACTGTTTATTCTGTATGTAATTAAAGTGCTGTATTTACTAATGAACACaactatacaatatttttcatgATTAAGCTACAGGTGCAGATTAGTTTTTACAGATTAGGCgaacaatgaaaaacatttagattgattattgattatattttca
>TU49409
CAAATTCGTCATGACAGTGTAGTGGTTTCTGATATATATAAGCATAATCACTAACACTTTTTTCATCTTTGCAGGCAGGGAACTGCACTAGACACAAAACTGGTGGCTTGCAACCTGGTTTGATTCTCAGGATGGGGTATCCACCTTCACTGTGTTTGGCTGCCCTGCTCTTCCTGAACATAGTCACCACAAATGGACTCCCCGCAACCACAGTTCAAACCACAAATTTGATGGGTACCACCACTGGAAACCGCACAACCACAGTTCAATCCACAGGGTTAACAGGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTAACAAGCCCCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCACCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAaGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACaag
>TU49413
CAGGCACCACAACTGGACGCCCCACAACCACAGTTCAATCCACAGGTTTGACAAGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACaag
>TU49415
CGTACAGCAGGCAGGGAACTGCACTAGACACAAAACTGGTGGCTTGCAACCTGGTTTGATTCTCAGGATGGGGTATCCACCTTCACTGTGTTTGGCTGCCCTGCTCTTCCTGAACATAGTCACCACAAATGGACTCCCCGCAACCACAGTTCAAACCACAAATTTGATGGGTACCACCACTGGAAACCGCACAACCACAGTTCAATCCACAGGGTTAACAGGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTAACAAGCCCCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCACCACAACTGGACGACCCACAACCACAGTTCAATCCACAGGTTTGACAAGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCACCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTGACAaGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACaag
>TU49416
CAGGCACCACAACTGGACGCCCCACAACCACAGTTCAATCCACAGGTTTGACAAGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACaag

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49392 False 639 lncRNA 0.49 3 15772893 15774593
TU49397 False 630 TUCP 0.51 13 15755613 15769529
TU49403 True 1199 lncRNA 0.45 9 15747400 15761183
TU49409 False 643 TUCP 0.49 11 15755613 15769491
TU49413 False 208 lncRNA 0.52 4 15755613 15761608
TU49415 False 630 TUCP 0.51 13 15755613 15769529
TU49416 False 208 lncRNA 0.52 4 15755613 15761608

Neighbor

gene id symbol gene type direction distance location
LOC103025516 NA coding downstream 10325 15723259 ~ 15737075 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding downstream 135978 15582625 ~ 15611422 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding downstream 166642 15572780 ~ 15580758 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding downstream 181483 15552591 ~ 15565917 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding downstream 199830 15541100 ~ 15547570 (-)
LOC103023209 NA coding upstream 66800 15841393 ~ 15851677 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding upstream 99766 15874359 ~ 16026122 (-)
LOC103021447 tmem26 coding upstream 421820 16196413 ~ 16208914 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding upstream 688735 16463328 ~ 16484145 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding upstream 763588 16538181 ~ 16713489 (-)
G36664 NA non-coding downstream 68094 15608091 ~ 15679306 (-)
G36657 NA non-coding downstream 198321 15548879 ~ 15549079 (-)
LOC111192377 NA non-coding downstream 220103 15514858 ~ 15527297 (-)
G36632 NA non-coding downstream 292590 15382512 ~ 15454810 (-)
G36634 NA non-coding downstream 335392 15407460 ~ 15412008 (-)
LOC111192406 NA non-coding upstream 16504 15791097 ~ 15795369 (-)
G36681 NA non-coding upstream 26437 15801030 ~ 15801264 (-)
LOC111192407 NA non-coding upstream 44723 15819316 ~ 15835522 (-)
G36754 NA non-coding upstream 88689 15863282 ~ 15864264 (-)
G36755 NA non-coding upstream 175182 15949775 ~ 15950699 (-)
c4h10orf88 LOC103041415 other downstream 950188 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2247223 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2435875 13307088 ~ 13311525 (-)
G36074 NA other downstream 3035855 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3674973 12067533 ~ 12072427 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 62512 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1138977 16913570 ~ 16915285 (-)
G37183 NA other upstream 1241535 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1273014 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 1404754 17179347 ~ 17184427 (-)

Expression


Co-expression Network