LOC111192407


Basic Information

Item Value
gene id LOC111192407
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15819316 ~ 15835522 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49434
caCCACAGCCCCACCCACTAGTGGAAGAATTGGCAGTCTGCTGGttgattagccagcagacttcctCTGAGGGAAGTCAGCAGACGAGAGAGAGatgGACTTTTCCAGATGGAGTAATGATCTTAAAGATTCTATTGTCCTCAAGCAAGAAGGCTCCAGAAAAATCCCCCTACAATGATAGACAGCAAGAGTCCTGCAGTATTGCCAGTTTTAGTCCAATGACTGGCCGGGTGTTCCTGATTGGTGACAGGATTGCAAGCTGGTGCGTCGTTCGCCGCTGGGTTCCAGTTAGGAGCTGCCTGCTGTTGTCCCCTTGAGCAAAGCACTTAGCCTCTGCTGCCCCAGATGGTGCTGTATAACTTCCAGTTGGGCAATGTTAGGCAGCATAATGACAACTTTGCATTGTAAAAAGGATCAGTAAAGTATCTTAACCTTTAATGATTTTGAtgatagtgtgtgtttgtgtattatgTTACAACATTTTGAAAGATTCTGAAGCTGGTcaatacattattaaacagacctctctcttgctctctgacattctttctgtctctttttgcaTCTCTCATTATACCTCAAACATCTGCCTTCccttccctccctctccccGAGCTCTGGAGACAGAATTC
>XR_002649905.1
ctgcatagaactaccctggcaccacccccaCCACAGCCCCACCCACTAGTGGAAGAATTGGCAGTCTGCTGGttgattagccagcagacttcctCTGAGGGAAGTCAGCAGACGAGAGAGAGatgGACTTTTCCAGATGGAGTAATGATCTTAAAGATTCTATTGTCCTCAAGCAAGAAGGCTCCAGAAAAATCCCCCTACAATGATAGACAGCAAGAGTCCTGCAGTATTGCCAGTTTTAGTCCAATGACTGGCCGGGTGTTCCTGATTGGTGACAGGATTGCAAGCTGGTGCGTCGTTCGCCGCTGGGTTCCAGTTAGGAGCTGCCTGCTGTTGTCCCCTTGAGCAAAGCACTTAGCCTCTGCTGCCCCAGATGGTGCTGTATAACTTCCAGTTGGGCAATGTTAGGCAGCATAATGACAACTTTGCATTGTAAAAAGGATCAGTAAAGTATCTTAACCTTTAATGATTTTGAtgatagtgtgtgtttgtgtattatgTTACAACATTTTGAAAGATTCTGAAGCTGGTcaatacattattaaacagacctctctcttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49434 True 632 lncRNA 0.46 3 15819316 15835494
XR_002649905.1 False 562 lncRNA 0.46 3 15819414 15835522

Neighbor

gene id symbol gene type direction distance location
LOC103033657 NA coding downstream 40469 15772958 ~ 15778847 (-)
LOC103024156 NA coding downstream 49847 15746284 ~ 15769469 (-)
LOC111192378 NA coding downstream 60453 15758390 ~ 15758863 (-)
LOC103025516 NA coding downstream 82241 15723259 ~ 15737075 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding downstream 207894 15582625 ~ 15611422 (-)
LOC103023209 NA coding upstream 5871 15841393 ~ 15851677 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding upstream 38837 15874359 ~ 16026122 (-)
LOC103021447 tmem26 coding upstream 360891 16196413 ~ 16208914 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding upstream 627806 16463328 ~ 16484145 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding upstream 702659 16538181 ~ 16713489 (-)
G36681 NA non-coding downstream 18052 15801030 ~ 15801264 (-)
LOC111192406 NA non-coding downstream 23947 15791097 ~ 15795369 (-)
G36678 NA non-coding downstream 58544 15755756 ~ 15760772 (-)
G36664 NA non-coding downstream 140010 15608091 ~ 15679306 (-)
G36657 NA non-coding downstream 270237 15548879 ~ 15549079 (-)
G36754 NA non-coding upstream 27760 15863282 ~ 15864264 (-)
G36755 NA non-coding upstream 114253 15949775 ~ 15950699 (-)
G36765 NA non-coding upstream 221943 16057465 ~ 16058635 (-)
G36800 NA non-coding upstream 378278 16213800 ~ 16214829 (-)
G36805 NA non-coding upstream 407555 16243077 ~ 16243333 (-)
G36677 NA other downstream 44723 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 1022104 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2319139 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2507791 13307088 ~ 13311525 (-)
G36074 NA other downstream 3107771 12709808 ~ 12711545 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 1583 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1078048 16913570 ~ 16915285 (-)
G37183 NA other upstream 1180606 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1212085 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 1343825 17179347 ~ 17184427 (-)

Expression


Co-expression Network