LOC111192378


Basic Information

Item Value
gene id LOC111192378
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15758390 ~ 15758863 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649883.1
TATCAGGCACCACATCTGGAAGCCCCACAAGCACAGTTCAATCCACAGTTTTTACAGGCACCACAACTGGACGCCCCACAACCACAATTCAAACCACAGGTTTGACGaGCACCACAACTGGACGCCCCACAACCACAGTTCAATCCACAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649883.1 True 152 ncRNA 0.52 3 15758390 15758863

Neighbor

gene id symbol gene type direction distance location
LOC103025516 NA coding downstream 21315 15723259 ~ 15737075 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding downstream 146968 15582625 ~ 15611422 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding downstream 177632 15572780 ~ 15580758 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding downstream 192473 15552591 ~ 15565917 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding downstream 210820 15541100 ~ 15547570 (-)
LOC103033657 NA coding upstream 14095 15772958 ~ 15778847 (-)
LOC103023209 NA coding upstream 82530 15841393 ~ 15851677 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding upstream 115496 15874359 ~ 16026122 (-)
LOC103021447 tmem26 coding upstream 437550 16196413 ~ 16208914 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding upstream 704465 16463328 ~ 16484145 (-)
G36664 NA non-coding downstream 79084 15608091 ~ 15679306 (-)
G36657 NA non-coding downstream 209311 15548879 ~ 15549079 (-)
LOC111192377 NA non-coding downstream 231093 15514858 ~ 15527297 (-)
G36634 NA non-coding downstream 346382 15407460 ~ 15412008 (-)
G36629 ki67 non-coding downstream 361353 15393011 ~ 15397037 (-)
LOC111192406 NA non-coding upstream 32234 15791097 ~ 15795369 (-)
G36681 NA non-coding upstream 42167 15801030 ~ 15801264 (-)
LOC111192407 NA non-coding upstream 60453 15819316 ~ 15835522 (-)
G36754 NA non-coding upstream 104419 15863282 ~ 15864264 (-)
G36755 NA non-coding upstream 190912 15949775 ~ 15950699 (-)
c4h10orf88 LOC103041415 other downstream 961178 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2258213 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2446865 13307088 ~ 13311525 (-)
G36074 NA other downstream 3046845 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3685963 12067533 ~ 12072427 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 78242 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1154707 16913570 ~ 16915285 (-)
G37183 NA other upstream 1257265 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1288744 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 1420484 17179347 ~ 17184427 (-)

Expression


Co-expression Network