LOC103023209


Basic Information

Item Value
gene id LOC103023209
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15841393 ~ 15851677 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255129.3
gtagtgtaggtaCTGAAAATGCGACAGAAACACGGAAAGAGTCTCCGCTGCTGAAATAGTCATTTTTTGGGGGCGTTTAATTCAAGCTTTAAGACTTTATACCACGCTGAGGTGCTTTATCAATGTTGTAGAACAGGTAGAAAGGTTCAGCATTTTGTTTTGGATGGAAAAGTTTGGAGAACTAGGTTAGGTTAAGAGAATGAATTAACTTAAATTCAGGCACCACAAAAGACAGCCAGGCTTGTTAAACTCCAGCTGGTCGAGCTTTGTTGAGCGCTGATAACTTAAGTGCACTTGTAGAAAACTTGCACTTTATTACACTTTAAACGTTTTCAGCTCTTTTTCAGACGTTTTTGTTCGTCCACACGTTGGTAACTACAGTGGTTGTTAGCTAGGCTAGGTTACCTGGCTCGCGTGGTGAGGACGATGCCTAGTAACGGTGGTCGCGAGGACGGCGGACCCGCACTGCCGTCCCTGAGAGCGGCCGGTCCGGCAGAGCCGCGGAGGAGGAACCGGCTAGAGCCTAGAAGCGGAGCTTCAgATGATAAGAATAAAGCTAGAGTGCAACACCAGACACGGACGGAGATCCGAAGAACACTTTCTTTAGATGCCATTTTGGCACCATACTTGCAAGGCCAGTGGCCCAGGGAGGGGGAAAGACGGGGACAAAGTGGACATCGCAAAAATGACAAATTCTCACAGCCTTCAAACTGGAGGCCGGACAAAGCCGAGAGAAGCAGCACTGGAAGTCATAAGCGTTCGGCATCATTGGGAAATGGAGACCATTTACGAGATATTGCCAAACTGAAGCAGCAGCTGCAGGCAGCTGGGCCTATAAACGGAATATATGTTCGTGAGAGACACCACCACCCTATGTGGGTTTGTGCAcagtcaCAGCCTGTACCCATCCCTCTGTCATCTTTGACCAATCTACCCTCTACTATGCGGCGAAGTGAGGAGAGACTAGACCAGGAGCTGGAGAGAGCCTTCACACACCAGTCACCCATCCAGCTGAGCAGGCTGCTAGATATCCCTGACGGCCACAGAGCTCCTGTCCCCTCGCTCAGCTCTAACAGCAGCTCTCGGTGCGAGTCCTCCTTCACCACGCATCCAACATCGCAGTCACCCTCTTCTTCCAGTGCCTCTCCACACAGCCTAACAGAGTTGGACACTGatttttctgctgctgctcagtCTTGCCCCTCCCCTCTGCTGAGCAGTGAAGCTGATGCTGCTCTTCTGTCCTGCTCACCTCGTCCCAACAAAAGTTACTGCTTTCAGAGAGAGCCGCCGGAAGGCTGCGAGAGAGTCCGAGTGTGTGAAGAGAATATCTCTCTGTATAAGAACCAGCCAAATCTCTTGTCCTGCCCTGATCCTAACAAGGTGAACTTCACTCCCTATGGGGGCTCCGCCTTTTGTCCAGTCAGTCTACTGAAGCCTCTCTTGCCCTCTGTGGACTTCCTGTTTCGGAGCTTGTCAGTTTCTCCTGGGACCTGCTGGGCAGGTCATGGTGGGGCCTGTCAGCCTCAGAGTCCAGCAGTAACAAAGACTGGGTACATGGGCTCTCTAGAGACAGCAACCACTGCAATAGTTCAGTGATGAGGAGAGAAAAGGGTGTTTGgtgttcatgtatttatttttttgaccaATGAAGCAATAAAGAGCTTTACCTCATTTATGCTCTTTCATGAAGATGATTAGATTGTCTGTAAGCGATTGGTGAAATCCTGAGGGTTCTGCCCTGAGTTGATCGTCATGCGTGTCTTCTGCTTGCCACGCACAAGGTATATGTTTTGCTTATGATTTTGGAATGGACAGGTGACCGTGCACTTTTAGCAGAAGAGGCCCTTTCTCTTTTGTGGAACCTGAGGAAAGTTGTTCAGTTTAAGCAACATTGGAACAGGGTGAAATTTTAACGTTCAATGAGTGGAATTTTGAGTTGTGGTGCACCGGATGTCACAACTGTAGCAACATTGtcgtttaaaaaaacagtcaagTCTTCTGATAAATATTCactgtttaagtgttttttttttctaaaacatttCAGCTTAAGCTCAATAAGTTATTAATCAAATTAGTCAACaaacaaggtgtgtgtgtgatattttgtgtatgatatttaattataaattaaggTGAAACTGTTTTAGTATTCTGAAAGAGGATATTTATTAGGGACATTCATGaccagtaaatacaaaaatgtgtctaatgggtaaaaaaaaaacaattaaaaagattTGTAAGTAGGCTTCATGATTTTCAAATTAGTTTCATTAAGAATTGCAGATTGAAATGGAACGGAGGAGAACTTTGTCTGAATGCCTTCTGTTGTAGACTCTCCTTATTTTGTTAAACAACCTTTCTTTAAAAGCAATGACCATTTATTGTTAAGGTACtgaattttgtaaatattttcctAGCTTCTGTGTCCTTGTAGCTTCTGTTTCCTTGATTGTTGCTACAGACAGGCTAGAATGTCCTTGTTTTCACcttttgttaatgtttttttgcacaGCATATGTCAAGTATGCCAATCCTTTTATACTCacttgaacatgttttgtattctTACTTGAACATAGTTACTACAAAGCAGCTGTGCTGGATTTTACGCTGTTAGCCTCATAAGCTATAAAATGTGAGCGGTGATGGATAATTTAAGTTCACAACATTTAAGAATCTTGCACTTGAGACTTTTTGCGTGTGTTTTACAATGAAACGCAATTATCTGTTaagttttgttcatttaaatgtttctcCATGGACTTGGCTGCTTGTTACCTTGTAATTTGGTGAGAGGAGGTTTGTTCAAGTTCAGAAACTTActtgttttaataaaagtgtttaaaatatc
>XM_022669186.1
gtagtgtaggtaCTGAAAATGCGACAGAAACACGGAAAGAGTCTCCGCTGCTGAAATAGTCATTTTTTGGGGGCGTTTAATTCAAGCTTTAAGACTTTATACCACGCTGAGGTGCTTTATCAATGTTGTAGAACAGGTAGAAAGGTTCAGCATTTTGTTTTGGATGGAAAAGTTTGGAGAACTAGGTTAGGTTAAGAGAATGAATTAACTTAAATTCAGGCACCACAAAAGACAGCCAGGCTTGTTAAACTCCAGCTGGTCGAGCTTTGTTGAGCGCTGATAACTTAAGTGCACTTGTAGAAAACTTGCACTTTATTACACTTTAAACGTTTTCAGCTCTTTTTCAGACGTTTTTGTTCGTCCACACGTTGGTAACTACAGTGGTTGTTAGCTAGGCTAGGTTACCTGGCTCGCGTGGTGAGGACGATGCCTAGTAACGGTGGTCGCGAGGACGGCGGACCCGCACTGCCGTCCCTGAGAGCGGCCGGTCCGGCAGAGCCGCGGAGGAGGAACCGGCTAGAGCCTAGAAGCGGAGCTTCAgATGATAAGAATAAAGCTAGAGTGCAACACCAGACACGGACGGAGATCCGAAGAACACTTTCTTTAGATGCCATTTTGGCACCATACTTGCAAGGCCAGTGGCCCAGGGAGGGGGAAAGACGGGGACAAAGTGGACATCGCAAAAATGACAAATTCTCACAGCCTTCAAACTGGAGGCCGGACAAAGCCGAGAGAAGCAGCACTGGAAGTCATAAGCGTTCGGCATCATTGGGAAATGGAGACCATTTACGAGATATTGCCAAACTGAAGCAGCAGCTGCAGGCAGCTGGGCCTATAAACGGAATATATGTTCGTGAGAGACACCACCACCCTATGTGGGTTTGTGCAcagCCTGTACCCATCCCTCTGTCATCTTTGACCAATCTACCCTCTACTATGCGGCGAAGTGAGGAGAGACTAGACCAGGAGCTGGAGAGAGCCTTCACACACCAGTCACCCATCCAGCTGAGCAGGCTGCTAGATATCCCTGACGGCCACAGAGCTCCTGTCCCCTCGCTCAGCTCTAACAGCAGCTCTCGGTGCGAGTCCTCCTTCACCACGCATCCAACATCGCAGTCACCCTCTTCTTCCAGTGCCTCTCCACACAGCCTAACAGAGTTGGACACTGatttttctgctgctgctcagtCTTGCCCCTCCCCTCTGCTGAGCAGTGAAGCTGATGCTGCTCTTCTGTCCTGCTCACCTCGTCCCAACAAAAGTTACTGCTTTCAGAGAGAGCCGCCGGAAGGCTGCGAGAGAGTCCGAGTGTGTGAAGAGAATATCTCTCTGTATAAGAACCAGCCAAATCTCTTGTCCTGCCCTGATCCTAACAAGGTGAACTTCACTCCCTATGGGGGCTCCGCCTTTTGTCCAGTCAGTCTACTGAAGCCTCTCTTGCCCTCTGTGGACTTCCTGTTTCGGAGCTTGTCAGTTTCTCCTGGGACCTGCTGGGCAGGTCATGGTGGGGCCTGTCAGCCTCAGAGTCCAGCAGTAACAAAGACTGGGTACATGGGCTCTCTAGAGACAGCAACCACTGCAATAGTTCAGTGATGAGGAGAGAAAAGGGTGTTTGgtgttcatgtatttatttttttgaccaATGAAGCAATAAAGAGCTTTACCTCATTTATGCTCTTTCATGAAGATGATTAGATTGTCTGTAAGCGATTGGTGAAATCCTGAGGGTTCTGCCCTGAGTTGATCGTCATGCGTGTCTTCTGCTTGCCACGCACAAGGTATATGTTTTGCTTATGATTTTGGAATGGACAGGTGACCGTGCACTTTTAGCAGAAGAGGCCCTTTCTCTTTTGTGGAACCTGAGGAAAGTTGTTCAGTTTAAGCAACATTGGAACAGGGTGAAATTTTAACGTTCAATGAGTGGAATTTTGAGTTGTGGTGCACCGGATGTCACAACTGTAGCAACATTGtcgtttaaaaaaacagtcaagTCTTCTGATAAATATTCactgtttaagtgttttttttttctaaaacatttCAGCTTAAGCTCAATAAGTTATTAATCAAATTAGTCAACaaacaaggtgtgtgtgtgatattttgtgtatgatatttaattataaattaaggTGAAACTGTTTTAGTATTCTGAAAGAGGATATTTATTAGGGACATTCATGaccagtaaatacaaaaatgtgtctaatgggtaaaaaaaaaacaattaaaaagattTGTAAGTAGGCTTCATGATTTTCAAATTAGTTTCATTAAGAATTGCAGATTGAAATGGAACGGAGGAGAACTTTGTCTGAATGCCTTCTGTTGTAGACTCTCCTTATTTTGTTAAACAACCTTTCTTTAAAAGCAATGACCATTTATTGTTAAGGTACtgaattttgtaaatattttcctAGCTTCTGTGTCCTTGTAGCTTCTGTTTCCTTGATTGTTGCTACAGACAGGCTAGAATGTCCTTGTTTTCACcttttgttaatgtttttttgcacaGCATATGTCAAGTATGCCAATCCTTTTATACTCacttgaacatgttttgtattctTACTTGAACATAGTTACTACAAAGCAGCTGTGCTGGATTTTACGCTGTTAGCCTCATAAGCTATAAAATGTGAGCGGTGATGGATAATTTAAGTTCACAACATTTAAGAATCTTGCACTTGAGACTTTTTGCGTGTGTTTTACAATGAAACGCAATTATCTGTTaagttttgttcatttaaatgtttctcCATGGACTTGGCTGCTTGTTACCTTGTAATTTGGTGAGAGGAGGTTTGTTCAAGTTCAGAAACTTActtgttttaataaaagtgtttaaaatatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255129.3 True 2860 mRNA 0.43 9 15841393 15851677
XM_022669186.1 False 2854 mRNA 0.43 9 15841393 15851677

Neighbor

gene id symbol gene type direction distance location
LOC103033657 NA coding downstream 62546 15772958 ~ 15778847 (-)
LOC103024156 NA coding downstream 71924 15746284 ~ 15769469 (-)
LOC111192378 NA coding downstream 82530 15758390 ~ 15758863 (-)
LOC103025516 NA coding downstream 104318 15723259 ~ 15737075 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding downstream 229971 15582625 ~ 15611422 (-)
ank3 ank3b,ank3,LOC107654059,LOC107695539 coding upstream 22682 15874359 ~ 16026122 (-)
LOC103021447 tmem26 coding upstream 344736 16196413 ~ 16208914 (-)
egr2 egr2,egr2b,LOC107596611,LOC107596614,LOC107653961,LOC107739063,LOC107745678 coding upstream 611651 16463328 ~ 16484145 (-)
jmjd1c jmjd1c,jmjd1cb,LOC108412835 coding upstream 686504 16538181 ~ 16713489 (-)
LOC103044660 LOC103044660,LOC108412396,LOC107653962,LOC108273895,LOC107745679,LOC107593523,LOC107596578 coding upstream 938950 16790627 ~ 16793507 (-)
LOC111192407 NA non-coding downstream 5871 15819316 ~ 15835522 (-)
G36681 NA non-coding downstream 40129 15801030 ~ 15801264 (-)
LOC111192406 NA non-coding downstream 46024 15791097 ~ 15795369 (-)
G36678 NA non-coding downstream 80621 15755756 ~ 15760772 (-)
G36664 NA non-coding downstream 162087 15608091 ~ 15679306 (-)
G36754 NA non-coding upstream 11605 15863282 ~ 15864264 (-)
G36755 NA non-coding upstream 98098 15949775 ~ 15950699 (-)
G36765 NA non-coding upstream 205788 16057465 ~ 16058635 (-)
G36800 NA non-coding upstream 362123 16213800 ~ 16214829 (-)
G36805 NA non-coding upstream 391400 16243077 ~ 16243333 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other downstream 877 15837105 ~ 15840516 (-)
G36677 NA other downstream 66800 15747400 ~ 15774593 (-)
c4h10orf88 LOC103041415 other downstream 1044181 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 2341216 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2529868 13307088 ~ 13311525 (-)
LOC103043629 LOC108412394 other upstream 1061893 16913570 ~ 16915285 (-)
G37183 NA other upstream 1164451 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1195930 17047607 ~ 17062947 (-)
LOC103030148 csdc2,LOC105919973,LOC102235694 other upstream 1327670 17179347 ~ 17184427 (-)
LOC103024241 maff,LOC107690056,LOC107692071,LOC107554043,LOC107584105,LOC107734233 other upstream 1522507 17374184 ~ 17381733 (-)

Expression


Co-expression Network