p4ha1 (p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765)


Basic Information

Item Value
gene id p4ha1
gene name p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13475166 ~ 13500177 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48757
TTAAACGGTCAGAAAAACGAACCtataaacgttacactgacccaGTTTTACTTGCTGTGTGAATACAGCCAAGCTCTCAGTTTTGTTAGTTGTATTACACCAGTATAATATAGATGCAGCAGATAGAGTTTAGGTTGACTCACACTTGAAAACTGGAATATTCCTTTAATATTGGTGCAGATTTGCAGGGGGCTGGTCTTGCACCTTAAAAATCAGACAAATCTGAAGCCAAGAACAAAGAGACAGAGCTCACAAAGAACTGAGAAGCCTGCAGATACTAAAGCCAGAATGCTAAAACAGCTTATAAGAACTAAGAACTAGATTTAGTAATGCCCTTATAGAATTGTATtggttaaattattttacacagttgtggTAAAATCATATATTAGAAAGATTGTAACAGGAATTTATTGACTTTTTCATCATATACTGGCATGCCATATGTCACAGAATAGGAACtggtatcatgtcccatgacttttgccatgtttcaTGGACAGCATGCCAGGCTTCCTACACCTAATATGAATGTCACTTCTTCCAGATTTGCTTGTCAGTGTTGcttgtttgcatggacaatttcGGCCTGAGCCACTGGTCACAACCATTACAATCaatcactgtgctgtccactgtgggggGTAATTCCTTTTATgaccatccatctggcacccactttCTGGCCTCACTTAAATTCCAATAATTCATGTTGCTTTGGCATGAGCACATTGGCCAGTCTttaaccttactcacaagataactccTCATAacgtacacatacacatatatggACACTCCCAAACTGTCTCTATagataacactttatttatgaTCCATTTGACAAACTTTCGTTTGTCATTGTAGCCTGTTATCTTTGGGGACTGTTTTTTTGCCATACAGCACCTTCCACATATCCCTCCACCATGAACAGATTTTAGAGGCCCAGTCTTCCACCAAACCCACTCTGAATTACTTAGTAATAATTTCTCCTAGTCATGTGACTAAGAAATAATACGCTCGAGATTTGtgctataatgtataatattgacACAGCTGTGCTGTGGTTGCGGCCTTGTGCCATAGATTAGCACAGCAGTGcaaatattacacaatatagcATGAATCTCGTGCTAATCGCTAGTGTAGTATAgtgattataccacagctcctttatcactgtttattgagaaaaaatgatttaaagaggataagaaaatatgatctgtttggttataaacgctctgcgagttaaaatagttccattgctgctctgtttgtagctgcgctgttttgCTGGTAAGCGTTGCATCGTTACTAGGTCACCTATATGTGGCGTAGTaaaacatggagagcttcggtaacagtgcattactggctgataatggcacctatagaacgcctctcacccaatcacattgcagggtcggaactaactgtggtataataatgcttatataataaaatttgatttagaGTGATTTGGAAAGATGGTAAAATTGCCCTTTAAGCTAAAAATCAAGCCGTCAGCTAGTTATGATTATCCAGACTATGGTCCTTTTGTTTCTCTTCATACATTATTAACCTCTCTAtatgggtggtgggtcattctcaggaGTGCAATGATACTGGCAcatcagtgctgctggagtttttaaacactatgtCCACTCACTGTTCACTTTATTACCTGTAACACTTTAAATACCTAGCTGCTCCACCATGTAGATGTAAAGTAGAGACAGAAGCTTCTTTGTTGTTGCACATTGTGTGTCTGTCATCATAGGTATTTTATGACGGCCTATAGGATGCTTTTGACTGGATACATCTGGTTGAAGGAtgattctcagtccagcagtgacactgaggtgttcaAAAAGTCCAGCAGTATAGTCCAGTCCTGCTGAGAATGACCTGGCATCCAAATAACAGCTACACTCTGGTGGTTTTATTGGGGCCTAACCTTTAAAGAACAGGGATAAAGGAGGATAATTAcgtatgcagaaaaacagaaggactacagtctgtaattatagaactacaaaagcCCCTTAATGATCAGTGCAGCTGATAAACCGAAGAGTGAGCTTATAAACAAGAAGGGGGTTATGTCATTCTGATATGACTGTGCATATCTGTGTGGCTAGAGCTACAGTACATACTGTCATTATCCCAAAAGCTGACTGTGCATTTGAAGcttagccacacacacacacacactctctctcactcttgcagTGTCACACTAACCCCTCTCCCTCCACCAGTCGgacactccctcactctctctgatGCCAGGTTGGCGCTCAAGAGCCGATTTACGTTCTGAGGTCATTCACACAGggacaaacagacagatggTTGACATTTATAGCCATGGGTACACACTGGAGCCTTTTTTCCCCTCAATGTggcacaaaacaaataaaagcttCATCTGCTTTTCAGCTACGCAATCTGACCGCTTTTAGTCTTCAGCTTGTTCATCTGATTTCACCATTAAAACTCCATTAAAACAATGTGCAAGAGTTTAACAGCAAAGAGACAAATGTTTGAATGAATGCCAAGTCTCCTAAAAGTAATGCTCAAAAG
>XM_022669142.1
CCCCAGAGCTCTGCAGATTACGGGTGCGAAGAGGAAAAAGCCTACACGTAGCCAGAGAGCAGAAATATCGATTGTGTTGGGAGGAAATCCGTAgagatggagatgtggtgtgtgtggtacgTGTTGCTGATCGGCTACCTCTGCAAGTGTTCTGCTCACAATGACTTCTTTACCTCCATTGGCCAAATGACTGATCTGCTGTTTACGGAGAAGGACCTAGTGACATCCCTAAAAGACTACATTAAAGCAGAGGAGAGCAAGCTGGAGCTGGTCAAGCAGTGGGCAGAGAAACTAGATGCCTTGACTGCCACGGCGACGCAGGACCCTGAGGGTTTCCTCGGCCACCCGGTCAACGCCTTCAAACTGATGAAGAGGCTGAACACAGAGTGGGGCGAGGTGGAGGACCTGGTGCTTAAAGACATGTCTGACGGTTTCATCTCCAACCTGACCATCCAGCGGCAGTATTTCCCTAACGATGAGGACCAGACTGGAGCGGCCAAAGCCTTGCTTAGGCTTCAGGACACCTACAGGCTGGACACACACACCATCTCCTCCGGTAACCTGCCAGGTGTAACATCCGATTTGCCTTATAAGAGTACTCTAACAGTGGACGACTGTTTTGAGCTGGGGAAGATTGCATACTCGGACGCGGATTATTACCACACAGAGCTGTGGATGGGGCAGGCTCTCAGACAGCTGGACAAAGGAGAGGAATCCAGCATTGATTCTGTGACTGTTCTGGACTACCTCAGCTACTCGGTCTACCAGCAAGGAGAACTAGAGAAAGCCTTGGAGCACACCAAGAGACTGCTGACACTGGACTCAGAACATCAGAGAGCCAACGGCAACCTAAAGTACTTCGAGTACCAGCTGGCCAAGCAGAGGAAGGCAGAGAAGGAGCAGAAAGGAACCACTGAGGAGAGAACGAAGAGAGACACGGAGAAAAATAGCTTCCTTCCTGAGAAGAGGAAGTACGAGAAGCTTTGCAGAGGGGAAGGACTCAGGCTGACGCCACGTAGACAGAGTCGACTTTTCTGCCGTTTCCATGACAACAACAGACACCCGTACTATATACTCGGACCCGTGAAACAGGAGGACGAGTGGGACCGGCCGCGCATCGTCCGTTACCACAACATCATCAGCGATAAAGAGATGGAGAAGGTGAAGGAGCTGTCCAAGCCCAGGCTGCGTCGAGCCACCATCTCCAACCCCATCACTGGTGTGCTGGAAACTGCCCACTATCGCATCAGCAAAAGTGCCTGGTTAGCAGCCTATGAGCATCCGGTAGTGGACCGCATTAATCAGAGAATCCAGGACATCACAGGCCTCGATGTCACCACAGCAGAGGAGCTACAGGTTGCTAATTATGGAGTAGGAGGCCAGTACGAACCACACTTTGACTTTGGACGGAAAGATGAGCCAGATGCCTTTAAAGAGCTCGGCACGGGAAATCGCATTGCCACCTGGCTCTTCTATATGAGTGATGTGGCAGCAGGGGGCGCCACAGTCTTTCCTGAAGTAGGAGCAGCAATAAAGCCAATGAAGgGCACAGCAGTGTTCTGGTATAATCTGTTCCCCAGTGGAGAAGGAGATTACAGTACAAGACATGCAGCCTGTCCAGTACTGGTGGGCAACAAGTGGGTTTCAAATAAATGGATCCATGAGAGAGGCCAGGAGTTCAGAAGACGCTGCAGTCTGCTCCAGTCAGACTGACCCCACCCTCTTGGTCCCTACCTCCCCCTGGTTCGCCCGTGATTCTGTGGACTATGAGCTGCGAGACGTTCCTGATGGACCCACCGCCCCACACTCCTTGAAGTCATGACCATCTGCAGCGTTTGCCTTCAGCAGTTAACTCATGTCtgccttgttttattttttatttctgatgaATTTGTGTCTTCATGATTTGTGTTGATACCATTAGTGCCTTTTCTCATTGCATCCAGCCCCCCAGACTCCCCCCAATTTTACAATACTCCACACTGCACAGGTCTGCATTAAAGGAAGACCTGAGTATGTTTGAACCTAATCTGTATCTGCACGTCTGAAGTCTACAGCTGATTGGCTTAGAGGGTAAATTTAACCACTGATTTGTTCTGTGCTTCTATTCACTTATAATAAAAGCATGTGGGCAGTTGCTGAATTTtggtgtaaatgtatgtaattaGCTTTTTTCATGAGTCGGTGTGCTTTCTCAAGCTCTACCTGATCGCCAAGGAAACCAGAAAGCTTTagaaagaaattaaatgttCAACAGTTTTTGCACTGTATACTTTgtgttatatgtatgtgtaaatatttattcataaatgTCAGCAACTGCCCAGAAGGTTTTTATTGTAAGAGAGTTAAGAATGAGATGGATTATTGTCCTTTCATAAATACAggtaaaaatgttttagcaaAGCAATGTTCACACAGCAAGTAAATGTGCCAAATACGATTTTCTCAACTTATTTGTacatttcatctttttttatttttccttgatGCTGCTGCAGCATCTTCATCTCATAGCATTCAGCCATTGCTTTAGAATAAACAGGGTGGTTGCGATGTGTGCCTTCTAATTatgtttaaacacacaaatatccCGTCACTGAAACACTCCCTCACTGCTACCATATATTTgcccttcttctttcttttttaatttggctgttcAAACACAAATCAGATACTGATCAggtatttgtatttaaattgattgtgaatctgaaaaatctgaatttaaatTTTCAGATTTAATGTGGTATTCAGcgttcacactgccacacaaatAGAGATATAACGGTTTGGGCCATTTATAACGGTTTTCAATTGTCTGACCATTTAAGGTTAAATccgaaaatagaaaattgaggGTAAAAccctatttattatttaattcttaCCATttgtgtattatattttatagtttgttttttaattctgcATGAATCTTCTGtcaattttctgatttttccgtCTTGTTACAAAAGTAAGTTGCATTTTACAATCAGATTTttgttacaagatacaaaaatggaaaaaaaaaaacattaagattctttttctttacaaaaaaaatggaaaattaaataaCACAATTTCATACCCAAATTTCTATGTTCAAATTTAGCCTTAAACGGTCAGAAAAACGAACCtataaacgttacactgacccaGTTTTACTTGCTGTGTGAATACAGCCAAGCTCTCAGTTTTGTTAGTTGTATTACACCAGTATAATATAGATGCAGCAGATAGAGTTTAGGTTGACTCACACTTGAAAACTGGAATATTCCTTTAATATTGGTGCAGATTTGCAGGGGGCTGGTCTTGCACCTTAAAAATCAGACAAATCTGAAGCCAAGAACAAAGAGACAGAGCTCACAAAGAA
>XM_022669143.1
CCCCAGAGCTCTGCAGATTACGGGTGCGAAGAGGAAAAAGCCTACACGTAGCCAGAGAGCAGAAATATCGATTGTGTTGGGAGGAAATCCGTAgagatggagatgtggtgtgtgtggtacgTGTTGCTGATCGGCTACCTCTGCAAGTGTTCTGCTCACAATGACTTCTTTACCTCCATTGGCCAAATGACTGATCTGCTGTTTACGGAGAAGGACCTAGTGACATCCCTAAAAGACTACATTAAAGCAGAGGAGAGCAAGCTGGAGCTGGTCAAGCAGTGGGCAGAGAAACTAGATGCCTTGACTGCCACGGCGACGCAGGACCCTGAGGGTTTCCTCGGCCACCCGGTCAACGCCTTCAAACTGATGAAGAGGCTGAACACAGAGTGGGGCGAGGTGGAGGACCTGGTGCTTAAAGACATGTCTGACGGTTTCATCTCCAACCTGACCATCCAGCGGCAGTATTTCCCTAACGATGAGGACCAGACTGGAGCGGCCAAAGCCTTGCTTAGGCTTCAGGACACCTACAGGCTGGACACACACACCATCTCCTCCGGTAACCTGCCAGGTGTAACATCCGATTTGCCTTATAAGAGTACTCTAACAGTGGACGACTGTTTTGAGCTGGGGAAGATTGCATACTCGGACGCGGATTATTACCACACAGAGCTGTGGATGGGGCAGGCTCTCAGACAGCTGGACAAAGGAGAGGAATCCAGCATTGATTCTGTGACTGTTCTGGACTACCTCAGCTACTCGGTCTACCAGCAAGGAGAACTAGAGAAAGCCTTGGAGCACACCAAGAGACTGCTGACACTGGACTCAGAACATCAGAGAGCCAACGGCAACCTAAAGTACTTCGAGTACCAGCTGGCCAAGCAGAGGAAGGCAGAGAAGGAGCAGAAAGGAACCACTGAGGAGAGAACGAAGAGAGACACGGAGAAAAATAGCTTCCTTCCTGAGAAGAGGAAGTACGAGAAGCTTTGCAGAGGGGAAGGACTCAGGCTGACGCCACGTAGACAGAGTCGACTTTTCTGCCGTTTCCATGACAACAACAGACACCCGTACTATATACTCGGACCCGTGAAACAGGAGGACGAGTGGGACCGGCCGCGCATCGTCCGTTACCACAACATCATCAGCGATAAAGAGATGGAGAAGGTGAAGGAGCTGTCCAAGCCCAGGCTCAGACGAGCCACTGTGCATGATCCTCAAACAGGGAAACTCGTCACAGCCCAGTACAGAGTCTCCAAGAGTGCCTGGTTAGCAGCCTATGAGCATCCGGTAGTGGACCGCATTAATCAGAGAATCCAGGACATCACAGGCCTCGATGTCACCACAGCAGAGGAGCTACAGGTTGCTAATTATGGAGTAGGAGGCCAGTACGAACCACACTTTGACTTTGGACGGAAAGATGAGCCAGATGCCTTTAAAGAGCTCGGCACGGGAAATCGCATTGCCACCTGGCTCTTCTATATGAGTGATGTGGCAGCAGGGGGCGCCACAGTCTTTCCTGAAGTAGGAGCAGCAATAAAGCCAATGAAGgGCACAGCAGTGTTCTGGTATAATCTGTTCCCCAGTGGAGAAGGAGATTACAGTACAAGACATGCAGCCTGTCCAGTACTGGTGGGCAACAAGTGGGTTTCAAATAAATGGATCCATGAGAGAGGCCAGGAGTTCAGAAGACGCTGCAGTCTGCTCCAGTCAGACTGACCCCACCCTCTTGGTCCCTACCTCCCCCTGGTTCGCCCGTGATTCTGTGGACTATGAGCTGCGAGACGTTCCTGATGGACCCACCGCCCCACACTCCTTGAAGTCATGACCATCTGCAGCGTTTGCCTTCAGCAGTTAACTCATGTCtgccttgttttattttttatttctgatgaATTTGTGTCTTCATGATTTGTGTTGATACCATTAGTGCCTTTTCTCATTGCATCCAGCCCCCCAGACTCCCCCCAATTTTACAATACTCCACACTGCACAGGTCTGCATTAAAGGAAGACCTGAGTATGTTTGAACCTAATCTGTATCTGCACGTCTGAAGTCTACAGCTGATTGGCTTAGAGGGTAAATTTAACCACTGATTTGTTCTGTGCTTCTATTCACTTATAATAAAAGCATGTGGGCAGTTGCTGAATTTtggtgtaaatgtatgtaattaGCTTTTTTCATGAGTCGGTGTGCTTTCTCAAGCTCTACCTGATCGCCAAGGAAACCAGAAAGCTTTagaaagaaattaaatgttCAACAGTTTTTGCACTGTATACTTTgtgttatatgtatgtgtaaatatttattcataaatgTCAGCAACTGCCCAGAAGGTTTTTATTGTAAGAGAGTTAAGAATGAGATGGATTATTGTCCTTTCATAAATACAggtaaaaatgttttagcaaAGCAATGTTCACACAGCAAGTAAATGTGCCAAATACGATTTTCTCAACTTATTTGTacatttcatctttttttatttttccttgatGCTGCTGCAGCATCTTCATCTCATAGCATTCAGCCATTGCTTTAGAATAAACAGGGTGGTTGCGATGTGTGCCTTCTAATTatgtttaaacacacaaatatccCGTCACTGAAACACTCCCTCACTGCTACCATATATTTgcccttcttctttcttttttaatttggctgttcAAACACAAATCAGATACTGATCAggtatttgtatttaaattgattgtgaatctgaaaaatctgaatttaaatTTTCAGATTTAATGTGGTATTCAGcgttcacactgccacacaaatAGAGATATAACGGTTTGGGCCATTTATAACGGTTTTCAATTGTCTGACCATTTAAGGTTAAATccgaaaatagaaaattgaggGTAAAAccctatttattatttaattcttaCCATttgtgtattatattttatagtttgttttttaattctgcATGAATCTTCTGtcaattttctgatttttccgtCTTGTTACAAAAGTAAGTTGCATTTTACAATCAGATTTttgttacaagatacaaaaatggaaaaaaaaaaacattaagattctttttctttacaaaaaaaatggaaaattaaataaCACAATTTCATACCCAAATTTCTATGTTCAAATTTAGCCTTAAACGGTCAGAAAAACGAACCtataaacgttacactgacccaGTTTTACTTGCTGTGTGAATACAGCCAAGCTCTCAGTTTTGTTAGTTGTATTACACCAGTATAATATAGATGCAGCAGATAGAGTTTAGGTTGACTCACACTTGAAAACTGGAATATTCCTTTAATATTGGTGCAGATTTGCAGGGGGCTGGTCTTGCACCTTAAAAATCAGACAAATCTGAAGCCAAGAACAAAGAGACAGAGCTCACAAAGAA

Function

symbol description
p4ha1a Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1).
p4ha1 Enables identical protein binding activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within collagen fibril organization. Located in endoplasmic reticulum and mitochondrion.

NR:

description
PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00472 P4HA; prolyl 4-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
TU48757 False 2592 lncRNA 0.40 1 13475166 13477757
XM_022669142.1 False 3382 mRNA 0.44 14 13477499 13500177
XM_022669143.1 True 3382 mRNA 0.44 14 13477499 13500177

Neighbor

gene id symbol gene type direction distance location
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 54224 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 89903 13361736 ~ 13385263 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding downstream 124072 13339493 ~ 13351094 (-)
avl9 avl9,LOC102783546 coding downstream 139143 13312552 ~ 13336023 (-)
LOC103042649 NA coding downstream 177736 13271875 ~ 13297430 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding upstream 8779 13508956 ~ 13514238 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding upstream 382280 13882457 ~ 14439229 (-)
wapl LOC108435041 coding upstream 1065761 14565938 ~ 14616622 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 1334275 14834452 ~ 14861783 (-)
trnal-caa_1 NA coding upstream 1451460 14951637 ~ 14951749 (-)
G36223 NA non-coding downstream 24960 13446047 ~ 13450206 (-)
G36114 NA non-coding downstream 464154 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 469419 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 473147 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 480279 12994574 ~ 12994887 (-)
G36236 NA non-coding upstream 1119 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 59041 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 87609 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 178619 13678796 ~ 13758346 (-)
G36300 NA non-coding upstream 332746 13832923 ~ 13833170 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 163641 13307088 ~ 13311525 (-)
G36074 NA other downstream 763621 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1402739 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2391984 11053659 ~ 11083182 (-)
rpl38 NA other downstream 4043938 9426075 ~ 9431228 (-)
c4h10orf88 LOC103041415 other upstream 1285775 14785952 ~ 14797212 (-)
G36677 NA other upstream 2247223 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2336928 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 3413393 16913570 ~ 16915285 (-)
G37183 NA other upstream 3515951 17016128 ~ 17018918 (-)

Expression


Co-expression Network