G36300


Basic Information

Item Value
gene id G36300
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13832923 ~ 13833170 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48850
tcatgcagctctgccatcaagctgccggcgtcagagggagcaaaattggccctgctccctctgggtgggtggatggcgctctctccccacatcactcctagggtgatgtctgcagcacagggcgtctgtgagctgatgtatcagaaccgagccactgtgctgtcctccaagcgcgctggcagctcggtaatgctgcatcagcagcagcgcgaaaagaagcggtggctgacttcacatgtatcggagga

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
TU48850 True 248 lncRNA 0.59 1 13832923 13833170

Neighbor

gene id symbol gene type direction distance location
dnajc9 dnajc9,LOC107684784,LOC107751706 coding downstream 318685 13508956 ~ 13514238 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 411981 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 447660 13361736 ~ 13385263 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding downstream 481829 13339493 ~ 13351094 (-)
avl9 avl9,LOC102783546 coding downstream 496900 13312552 ~ 13336023 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding upstream 49287 13882457 ~ 14439229 (-)
wapl LOC108435041 coding upstream 732768 14565938 ~ 14616622 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 1001282 14834452 ~ 14861783 (-)
trnal-caa_1 NA coding upstream 1118467 14951637 ~ 14951749 (-)
trnal-caa_2 NA coding upstream 1118671 14951841 ~ 14951953 (-)
G36283 NA non-coding downstream 74577 13678796 ~ 13758346 (-)
G36257 NA non-coding downstream 222987 13587786 ~ 13609936 (-)
G36253 NA non-coding downstream 259556 13559218 ~ 13573367 (-)
G36236 NA non-coding downstream 328873 13501296 ~ 13504050 (-)
G36223 NA non-coding downstream 382717 13446047 ~ 13450206 (-)
G36330 NA non-coding upstream 3695 13836865 ~ 13841911 (-)
G36331 NA non-coding upstream 15804 13848974 ~ 13849237 (-)
G36339 NA non-coding upstream 151247 13984417 ~ 14030941 (-)
G36396 NA non-coding upstream 719575 14552745 ~ 14569986 (-)
G36417 NA non-coding upstream 871373 14704543 ~ 14705231 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 332746 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 521398 13307088 ~ 13311525 (-)
G36074 NA other downstream 1121378 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1760496 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2749741 11053659 ~ 11083182 (-)
c4h10orf88 LOC103041415 other upstream 952782 14785952 ~ 14797212 (-)
G36677 NA other upstream 1914230 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2003935 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 3080400 16913570 ~ 16915285 (-)
G37183 NA other upstream 3182958 17016128 ~ 17018918 (-)

Expression


Co-expression Network