G36223


Basic Information

Item Value
gene id G36223
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13446047 ~ 13450206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48751
GACTCCCACTGGGTCCTCTGCTGCAGCCTGTTGTTGAGCAGATCCATCGCCTTCCTCCTCACTGAGGGCAGCTGATTACCCATCAGCCCACGCACCACCGTGATGAAGGTGTCTGTGGGTAGAAGGGCGTTGACCTTATCCAGGACATCATAGGACTTGTTGAGCAGTGCCCTCCAGAACTTGGTGGTGGGTTGGTCTGCGTTCTCCTCTACGCACTGAGCAACCATGTGAATGTAGCGCAGGTTCTCCTCTAAAAGACTTTGCTGGAGGTTCTGCAGAGCTTTTtcagtcaaatcctcacaatCGGCCACCTTTCCTACAAAGCTGCTGGAGGACAGTAGCTGGGCCATGAAGGAAACGGAGAGGAATTTGAAATGCCGGAGCTCTTTTCCACTGTGGGTCTCCACACTGAAGATCAGATCTGTGGTGCTCTCCTCCTTCTTCTGTCCTCTCGTTCCCCTCCCCCTCCTCTTGTCCGTAACTTCTTCTTTGTCCTTTGGTAGACTTGTGAGGAACTGAAGGATCTTAATGAGAGAGGCGAGCTGCTCCTGAACCTCAAACTCACAACACAACGAGATCCAGAACTCCTGGTCCCGCTCCAGAGCTGCTTCCTTCTCTGCTCCCGCAGTGCTGAGGGCAGTGTGCTGTTTAAATAGGAGCAGCATCAGGACCCAGAGGAATCGGTCCGGTCCCAGAGTATCCAGCAGCTGCTTGAGGATGGGAAGGCGTCGGTGCTCGGGCACATGTGGGAGAGCGTCAACGAAAACGTGCACAATTCTGGTCACCACAGCCTCCATCTGTCCCTTCGACTGACTGCCCGCAGCCTCGTG

Function

GO: NA

KEGG:

id description
ko00230 Purine metabolism
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU48751 True 830 lncRNA 0.54 6 13446047 13450206

Neighbor

gene id symbol gene type direction distance location
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding downstream 25105 13391819 ~ 13420942 (-)
cdh20 cdh20 coding downstream 60784 13361736 ~ 13385263 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding downstream 94953 13339493 ~ 13351094 (-)
avl9 avl9,LOC102783546 coding downstream 110024 13312552 ~ 13336023 (-)
LOC103042649 NA coding downstream 148617 13271875 ~ 13297430 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding upstream 58750 13508956 ~ 13514238 (-)
grid1 grid1,grid1b,LOC106578986,LOC106589364,LOC103147060 coding upstream 432251 13882457 ~ 14439229 (-)
wapl LOC108435041 coding upstream 1115732 14565938 ~ 14616622 (-)
c4h16orf62 cunh16orf62,c13h16orf62,zgc:163107,cssa28h16orf62 coding upstream 1384246 14834452 ~ 14861783 (-)
trnal-caa_1 NA coding upstream 1501431 14951637 ~ 14951749 (-)
G36114 NA non-coding downstream 435035 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 440300 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 444028 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 451160 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 454626 12991074 ~ 12991421 (-)
G36236 NA non-coding upstream 51090 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 109012 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 137580 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 228590 13678796 ~ 13758346 (-)
G36300 NA non-coding upstream 382717 13832923 ~ 13833170 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 134522 13307088 ~ 13311525 (-)
G36074 NA other downstream 734502 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1373620 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2362865 11053659 ~ 11083182 (-)
rpl38 NA other downstream 4014819 9426075 ~ 9431228 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 24960 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1335746 14785952 ~ 14797212 (-)
G36677 NA other upstream 2297194 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2386899 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 3463364 16913570 ~ 16915285 (-)

Expression


Co-expression Network