G36114


Basic Information

Item Value
gene id G36114
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13006516 ~ 13011012 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48613
TTTAATggcttttaataaatacacaagcAGGAAGCATTCATCTAAACAGCTCTTCAGCATCATTACACAGAGAGGCGTTTATCAGGTGGCCATCATAAGAGGTCTAATGTCCTCCTCTGACCTTTTAAACACAGACAGTACGTTCATTTGCAGGCAGATGGAGAAGCAACaacataataattataataatcactTACATCACAAACATACAGAGTTAAAGTCATTAATGAGTCAGAAATCTATTTAGATTATCattgtcaattaaaaaaagacaaaataatggTGTTTAATCACAGACACATTGGGAGACTGAAGGAGAACACAGGTATGTAAGTGATGCTCGAACGTGCTGTAGAAATGTAACAatagtgctttttaaaattgtatatgttcctaaataaatgttattatattatctggatgtcatatattttttttttacatttatctaCACACTCTATTTAGGTCAGCTGTTGATTAGACCACtggttaaccctttcagaccctgcgtccattACACTGGACatcatatattttcatatatttatatattttcctgtttttaaagtttgtttgcaCATACAATTGATTGAGACctgtttatgctgttttttttcagaatagACCACAAACAAGTCAGCCAATGACTGAAAGTTTACAAGCCAAtggccaatgaaacagtagcttagctccacccactgcattggggggggaaataataataataattttaagtgttttagatttttttgagtttttatcatgtttattttacagtttttataatTTTCCATTCCACTGGAATtgattcaggtctgaaagggttcatttattaatacaccattaataaacacatttataacctatttataaaccctttataaagaagacttatttttaagtggtacctatataaaaaaaaaactgacctgATATTGAATTAAATCTCAGAAATCCTACCACTGTACTCtcagattaaaatataaatacattattatatgtTAATACCACTGACCTCTACCAGCTATGTCTACTAAGCCGTCAGAAACCAATCGCCATACTTAAAATCaagttttacattaattaaaacatgtttttattaatttacaaaatGAGTCGTTTTGGTAAGTAGGTTAGTAGGCTATGTACAGAAGCAGGTAGGCACATGTGCATCTCATCTCTACTCCTAGGCGTCTGCTTGAATTAAATTTCCTATCTGGCTAGATAAAGGCTAAAACATGGCTATAGGAATGGTAAATACATAGCACCATtttgttgaataaaaataatgataaaaaaaaaaataaacttaaaattatttatcaTAGAAGCAGGAAATGGCCaacaattctattctatttgccCAAGAATAGCTCCTCGATTTGCCTCAATAGTCGTATTACTATATTAGTTCTATTTCTAGAACTTCTCtgtttcatttaaaacactCTATATTTAATACATGCTCTTTGGTTAAAATACTTCAAACAACCTTATTCTGGCagtataagaaaataaaatagacaCACAATTTGGCTAATAGTGTACTAACCtctgacaaacacacactttaggCACTTAATTAGCTAAAACAAAAAGCTCTTAAGAGGTTCTTTGTCAACAAACACAACAATACTATGTACATATATGTAAAAAGTGTTATAAATAGGTTTTAAACCATAGATACTATATACATCTTCAAATCATGACAGTATTGAGTGTTATATATGTCTTTCTTATTTTCGGTGGGCGTCGTGGTGGGTTCCATGTGTGGATATCGGCCGTCACAAGAATCTGGTCTGTGGATGCAGTGCGGTACTTTAGCTTCAGAGCTTAGACTTCTGGTGGCCAGAGCTAGGGGGCGCCACTTCATTCTCGTTTCCTCAAGATGACGTAGATTAACCCGCTGATGAACGCCAGAGGGAACGCCACCCAGGCCAGGATGTAGGCGAAGCCGAAGGAATCGGATGGGGCGGTCCATTCCGGACTCATTATTGTGTAGATGATCGCTCCACTCATGACGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48613 True 2026 lncRNA 0.34 2 13006516 13011012

Neighbor

gene id symbol gene type direction distance location
LOC103038558 NA coding downstream 77548 12926233 ~ 12928968 (-)
LOC103038875 NA coding downstream 92149 12837168 ~ 12914367 (-)
LOC103039695 LOC108429709 coding downstream 303685 12698588 ~ 12702831 (-)
trnaq-uug NA coding downstream 337729 12668716 ~ 12668787 (-)
trnaq-cug_2 NA coding downstream 338609 12667836 ~ 12667907 (-)
trnam-cau_19 NA coding upstream 186690 13197702 ~ 13197775 (-)
trnam-cau_20 NA coding upstream 189154 13200166 ~ 13200238 (-)
LOC111192419 NA coding upstream 196582 13207594 ~ 13209507 (-)
LOC103042955 LOC108431373,LOC106578596,LOC103365861,LOC106590056 coding upstream 243436 13254448 ~ 13260826 (-)
LOC103042649 NA coding upstream 260863 13271875 ~ 13297430 (-)
G36125 NA non-coding downstream 769 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 4497 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 11629 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 15095 12991074 ~ 12991421 (-)
G36115 NA non-coding downstream 51771 12954323 ~ 12954745 (-)
G36223 NA non-coding upstream 435035 13446047 ~ 13450206 (-)
G36236 NA non-coding upstream 490284 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 548206 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 576774 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 667784 13678796 ~ 13758346 (-)
G36074 NA other downstream 294971 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 934089 12067533 ~ 12072427 (-)
clrn3 NA other downstream 1923334 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3575288 9426075 ~ 9431228 (-)
G35512 NA other downstream 3800605 9204570 ~ 9205911 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 296076 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 464154 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1774940 14785952 ~ 14797212 (-)
G36677 NA other upstream 2736388 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2826093 15837105 ~ 15840516 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G210964 NA non-coding NC_053132.1 CM020929.1 8969083 ~ 8971699 (+)
bowfin (Amia calva) AMCG00013288 NA coding CM030125.1 CM030125.1 27130164 ~ 27140599 (+)