LOC111192419


Basic Information

Item Value
gene id LOC111192419
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13207594 ~ 13209507 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669433.1
ATGAGCAGACTGGGCACTCTTTTCCAGAGATGGAGAAGGGAAACTGAAGAGACAGATGAGTTATTAGAGGACATTGCCTTGGAGTATGAACACCTAGATGAGGGTTTTGATGAGCCTGTGTTTCCAACCATGGATAACATTTTAGCTGATCCATTGGCTGCTACCATCACCATCCCAGCTGTGACCTCACCCTCCATTGGCCTTCTGCTTGTGCCACCATCAGAACAAACATCTGTGCTCTCACAGTATCCACCATCACCTCTGCTGCCTGCTACTCACATTTCTTCTCCCTCACCACACCAGTGTTCTGTACCACCTGTTGCTCCACTTACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGCTCCTCCTGCCCTCAACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCACTTATACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCCCTCACACAGTCCTCTGCCTCCTGCGTGGCTCCTCCTGCACTCATCCAGTCCTCTGCCTCCTGCGTGGCTCCTGCTCCAGTTGCACAGATGTCAGCGTCCTTCATGCCCCTTGCTCCACTTGCGTCAGTCTCTGCCACCACCGATGCCACTACAGAGGAGCCTGTAGAGCAACTGGCTGTAGATGACCATAACATACCTGGGATGGACCGTGTGGACAGCCTTGCTGAGTACCTAGTGGGTCTTCGCAGTGAAACAAGTCTGATAATAACCAACCAACAGGCTAGTACCATTATAGGCCTTTGGCAAAATTTGCTACCATATGACCAGCAGCGTGTAGCTTTTGCTGCTCGTTATCAGGACCGGCTCACCACAGGCAGGTTCAGGtcaccaaagaaaaaaagagagtttaCCCCTGGTGTGGAGAGCCTAAAACGCTGCATTCTGAGCTCCTCTGGTTCTCCTGCCCAGTGGCCAGACTGTTGCCGTCTGTTGGAAGCCATTTTTGTCAAGCTCTGTGGAATACACAGGAGCCCAAAAAAACAAGGGCAGGTGACTTTGTCAAGGTGGGCTTTGATTCTAAAAGACTACAGCAAAATCCGACAGCTTATCCTGGGTAATGGTGCTGTTATGCAAAGCACCACTCTTCAGCTAGTGGAAGTCAACTCAACCACCCTGAACCAATGGTACAACAAACGAGTCAAGAAACAGGATGTTCAGTTAGTGCTGCAAGGGATAAACCTGCCATCTTCTGTCCCTGTTGCCACTGAGCCTCTTCAGCCTGCAAATCTTCACCCTGCTGTTGCTCCTCCACCACCAGGTGTTCAACATGTGTACCACTTGCCACAAAGCACAGTAGGGCAGGCAAAGTGTAAAAAACGAGCTGCATCAACAGATGACCACTTCTTACCACCTTCTGCATGTCAGAAGATTTGTGTGCTCAGGAGGAAACTTCTTTCCAAAGCCTTCCAACTTGTTCCCGTCTTCTCAAACATTTTTCTCTGCAAACCACTACAACTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669433.1 True 1776 mRNA 0.53 2 13207594 13209507

Neighbor

gene id symbol gene type direction distance location
trnam-cau_20 NA coding downstream 7356 13200166 ~ 13200238 (-)
trnam-cau_19 NA coding downstream 9819 13197702 ~ 13197775 (-)
LOC103038558 NA coding downstream 278626 12926233 ~ 12928968 (-)
LOC103038875 NA coding downstream 293227 12837168 ~ 12914367 (-)
LOC103039695 LOC108429709 coding downstream 504763 12698588 ~ 12702831 (-)
LOC103042955 LOC108431373,LOC106578596,LOC103365861,LOC106590056 coding upstream 44941 13254448 ~ 13260826 (-)
LOC103042649 NA coding upstream 62368 13271875 ~ 13297430 (-)
avl9 avl9,LOC102783546 coding upstream 103045 13312552 ~ 13336023 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 129986 13339493 ~ 13351094 (-)
cdh20 cdh20 coding upstream 152229 13361736 ~ 13385263 (-)
G36114 NA non-coding downstream 196582 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 201847 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 205575 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 212707 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 216173 12991074 ~ 12991421 (-)
G36223 NA non-coding upstream 236540 13446047 ~ 13450206 (-)
G36236 NA non-coding upstream 291789 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 349711 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 378279 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 469289 13678796 ~ 13758346 (-)
G36074 NA other downstream 496049 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1135167 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2124412 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3776366 9426075 ~ 9431228 (-)
G35512 NA other downstream 4001683 9204570 ~ 9205911 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 97581 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 265659 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1576445 14785952 ~ 14797212 (-)
G36677 NA other upstream 2537893 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2627598 15837105 ~ 15840516 (-)

Expression


Co-expression Network