LOC103036331


Basic Information

Item Value
gene id LOC103036331
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12067533 ~ 12072427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48386
AACAGGGGGAAGTACACAcagcagaggaaagcgcagGTTGGAGGCGGGACAcgttgtttttatgtttttagtgattatttaaagtgtttatgtaattatatgctttgcctttttaaataaagctataGAGGGAATAGGTGAACGTTAAGAGCTTTAATTCATGTAATTAGCTGGATTAGTGGTCTGACACGTTGTTTTACCGGGGTTTTCTTTATGTTTGCTCGTTTTTCGGGTCTGTATTAGAGGATATTGGAagtttttacctctttttataGTTCATGGACTAGTTTAGGATAGATAAAGGAATAAAGAACCCCCTTCATCATCATGTCTATGGATTATATGAGTGCACTACTGCAGAACAAGAGAGGCCGAGAAGGAGATCCAGAAGATTGGGGCTTCAATCCGACTAAAAGAGTGTGCAATGGACTGGAAAGCTGTGTCCAGGCTGAATATGGAGCCCTGACCGAGAGCCCAATGGACACATGGGAGATCCAGCAGGTCAGCCATCTGAAggacaccaccaccaccaccatcatcaacaacaacaacaaccaccaccaccataaggtgCTGGAAGCTCAGAATGGCGGCGGTCCGCAGTGCTGCCCCCGATGCCTGGCAGGAGAACCGGGCCATATAAATCATATCATGCAGAGGTATTGATCAGGAGGTCAGCTCTGCGGGTCCTGCAAAGGATGAGTAAGGAAGGAGACTGGAGGGAACGGGCCACACtgtgagaagaaaaagaaggaggaagagaaaCAGGAGGAGGAGTAGTAGCCTGCACTTTGTCCAGCTCATATCACAGCAGCACACGTTGTGCCTTGTTTATCCGTTTATCACGAGTACTGTATCACCCTGCTGCACTGTCGCCTGtagttaatattatattagCATCAAATCACTGCTGAGTTAATGAAAGGGCTGAATGACCACTGGACATTAGTACTGCTTTAATATTCCTGCATGATGATTTAGGGTGACGCCTAAtttaaaggaacacaaattagggtTTTATTAAGATGCGTTAAGTTCAGTTCTTTTGTTCAGTAAGGTCTTAATTAGACATTTCAGTATAGAATTTTAAGGATGTTGTAAAAGGATATAAGACACTATgaactagagctgggc
>XM_022669101.1
ATACGTGCAGACCAGGAAAAATTGAACAGGGGGAAGTACACAcagcagaggaaagcgcagGTTGGAGGCGGGACAcgttgtttttatgtttttagtgattatttaaagtgtttatgtaattatatgctttgcctttttaaataaagctataGAGGGAATAGGTGAACGTTAAGAGCTTTAATTCATGTAATTAGCTGGATTAGTGGTCTGACACGTTGTTTTACCGGGGTTTTCTTTATGTTTGCTCGTTTTTCGGGTCTGTATTAGAGGATATTGGAagtttttacctctttttataGTTCATGGACTAGTTTAGGATAGATAAAGGAATAAAGAACCCCCTTCATCATCATGTCTATGGATTATATGAGTGCACTACTGCAGAACAAGAGAGGCCGAGAAGGAGATCCAGAAGATTGGGGCTTCAATCCGACTAAAAGAGTGTGCAATGGACTGGAAAGCTGTGTCCAGGCTGAATATGGAGCCCTGACCGAGAGCCCAATGGACACATGGGAGATCCAGCAGGTCAGCCATCTGAAggacaccaccaccaccaccatcatcaacaacaacaacaaccaccaccaccataaggtgCTGGAAGCTCAGAATGGCGGCGGTCCGCAGTGCTGCCCCCGATGCCTGGCAGGAGAACCGGGCCATATAAATCATATCATGCAGAGGTATTGATCAGGAGGTCAGCTCTGCGGGTCCTGCAAAGGATGAGTAAGGAAGGAGACTGGAGGGAACGGGCCACACtgtgagaagaaaaagaaggaggaagagaaaCAGGAGGAGGAGTAGTAGCCTGCACTTTGTCCAGCTCATATCACAGCAGCACACGTTGTGCCTTGTTTATCCGTTTATCACGAGTACTGTATCACCCTGCTGCACTGTCGCCTGtagttaatattatattagCATCAAATCACTGCTGAGTTAATGAAAGGGCTGAATGACCACTGGACATTAGTACTGCTTTAATATTCCTGCATGATGATTTAGGGTGACGCCTAAtttaaaggaacacaaattagggtTTTATTAAGATGCGTTAAGTTCAGTTCTTTTGTTCAGTAAGGTCTTAATTAGACATTTCAGTATAGAATTTTAAGGATGTTGTAAAAGGATATAAGACACTATgaactagagctgggcgatgttgtaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48386 False 1134 TUCP 0.43 4 12067546 12072403
XM_022669101.1 True 1171 mRNA 0.43 4 12067533 12072427

Neighbor

gene id symbol gene type direction distance location
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 28951 11897053 ~ 12038582 (-)
fam196a fam196a coding downstream 1186699 10827410 ~ 10880834 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 1573347 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 1591656 10467821 ~ 10475877 (-)
LOC103039991 LOC103039991 coding downstream 1617248 10443259 ~ 10450285 (-)
tcerg1l tcerg1l coding upstream 170854 12243281 ~ 12417270 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 503084 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 595409 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 596289 12668716 ~ 12668787 (-)
LOC103039695 LOC108429709 coding upstream 626161 12698588 ~ 12702831 (-)
G35946 NA non-coding downstream 146 12050053 ~ 12067387 (-)
G35944 NA non-coding downstream 42957 12020754 ~ 12024576 (-)
G35941 NA non-coding downstream 72313 11975089 ~ 11995220 (-)
G35914 NA non-coding downstream 216167 11851126 ~ 11851366 (-)
G35901 NA non-coding downstream 331001 11736322 ~ 11736532 (-)
G36043 NA non-coding upstream 387345 12459772 ~ 12461854 (-)
G36045 NA non-coding upstream 501428 12573855 ~ 12574842 (-)
G36047 NA non-coding upstream 502502 12574929 ~ 12575451 (-)
G36061 NA non-coding upstream 532568 12604995 ~ 12605356 (-)
G36082 NA non-coding upstream 613599 12686026 ~ 12686397 (-)
clrn3 NA other downstream 984351 11053659 ~ 11083182 (-)
rpl38 NA other downstream 2636305 9426075 ~ 9431228 (-)
G35512 NA other downstream 2861622 9204570 ~ 9205911 (-)
tbata NA other downstream 3063637 8938933 ~ 9003896 (-)
G35429 NA other downstream 3139816 8924828 ~ 8927717 (-)
G36074 NA other upstream 637381 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 1234661 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 1402739 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2713525 14785952 ~ 14797212 (-)
G36677 NA other upstream 3674973 15747400 ~ 15774593 (-)

Expression


Co-expression Network