wbp2 (wbp2,LOC107667802,LOC107578800)


Basic Information

Item Value
gene id wbp2
gene name wbp2,LOC107667802,LOC107578800
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10487067 ~ 10494186 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669076.1
GTCCTTTAAAGACGCGCGCTGCGTCAGGGAGGGGCGGTACTCCGCGGGACGGTGCCGGGCTGCGGGAGCTGCAGGTGCGGTTATCTCTAATCACCAGTATCGGAAACTGATCGATCAGATCCACCGatcagcagcagagagatctCCAACAGCGCGTGAATGAGAAGAACCCAGAATGACCCTGAATCAGAACCATTCCGAGTCCGGGGGAGTCATCATCAACAACAGCGAGAGTGTTCTGATGTCCTATGAAAACGTGGAGCTGTCGTTCAGTGATGCTGATCGTTTACCAGAGCTGTTCAAGAAGAGCAAGAAGGGGAGCATCTATCTCACTCCGTACAGGGTAATCTTCGTGACAAAGGGGAAGGATGCTCTTCAGTCCTTCATGATGCCATTCTATCTAATGAAGGGCTGTGAAGTCAAACAGCCTGTTCTTGGAGCCAACTACATAAAGGGTGCGGTGAACGCTGAACCAGGGGGTGGTTGGGAGGGATCTGCCACCTTCAAGCTCATCTTTATCGCTGGAGGAGCTATCGAGTTTGGGCAGTATATGATGCAGGTGGCAGCTCAGGCCTCCAGAGGGCAGCCTGTGATTGGAAATGTTGGGAATATGGGCTGTTCGTACATGGCTAACGGTGCGTACTCATACGCTCCTCCCCCTCCAGCCAACGGCATCTACTCCACCGGACCAGCACCGCCTGGCTACGCCTATCCTGGGCCTCCACCCCCTGGTGCATTCTACCCCAGTCCTCCTGGTTTTGATGGTCCTGCTGCGTACATGCCTCCGCCCCCTTATTCTGCTTCAGTTGGCCAAGCCCCCTTAGACCCAGACCTTCCCCGGACCCCTGCAGctGAAGCAAAGGCAGCCGAGGCAGCGGCGAGTGCAAGCTCCGCCTCTCTCGCGTCGACTCACGTTTACCTCCCAGAGgaCAAGCCCCCGCCTTACTCTCCACCTGACGACAAGAAGAACCAATAAAATCTCAGCATTACAGCCGCCCTCCTCTCACTCACCCTGCATCTCATTAAATCAGCTCTACTAACTGTGTCCTCCTGTacgattacagagagagagaagagagagagagagagagaaagagaggaggagagaaagagacggagagaaagagggagagaagagcTTAAACCTTTAGGACTGTTAGCTGATGAGCAGTGAACCGTCACAGCAGAGCAGAATCATGGAGTTCTGTAATTTACTCtctactgtaaatgtaatgaaCTGACTGTGGAGCTTTTTTAGGTGGACGGTTGATCTTGTGTGAGTGAGGACTCGGTGcttcaaatggttctttaatCGATACGTAGAAGAACCGCTTTAGGTTCTAGAACGGAGAATGTGTTTGTAATAGAGGTGGAAAAtcaaacaaaggttttttgaaTACATTCCTTAGTCAACAAAGAACCATATTTGGTCCAGAACCATTTTTTGAAGCACCTTTATATTTAAAAGTGCATAAGTAACAGgaggatgatgataatgatgaggaggaggatgatgatcAGGGATTGTAGGAGCAGCAGGTTTGGACAGTGTGAAAAGAAGGACTAATCATTACTGTGTTTGGGTTCTGATCTGATCTTCAGCAGCCTCTCACCTCCATGCTGTCTCCAGAATGTGTGTATTAACCTGAACCAAAGCGCTGCATACCGTGGATCTGCTGTACCGTCACTTTTGGCCCTCTTACGCTTGTGTCTGTCGCCATTCTGAAGCTTGACTTTATTACAGCACTTTAACCTCGTCATgtaccccccctcccccgtgtgcatatatgtttattgatattatttttaatttattacatgAATTGTTTGAACTGTGTAACCAGTCTAGCATGGTCTCAGCTGTATCGTCTAATGTATAATggattgtattttattaaatttaaagtatCAGAGAAAA

Function

symbol description
wbp2 Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within cellular response to estrogen stimulus and positive regulation of gene expression, epigenetic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 107. Orthologous to human WBP2 (WW domain binding protein 2).

NR:

description
WW domain-binding protein 2-like

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669076.1 True 1918 mRNA 0.49 8 10487067 10494186

Neighbor

gene id symbol gene type direction distance location
mrpl38 mrpl38 coding downstream 11190 10467821 ~ 10475877 (-)
LOC103039991 LOC103039991 coding downstream 36782 10443259 ~ 10450285 (-)
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding downstream 1064356 9314584 ~ 9422711 (-)
polr3a polr3a coding downstream 1366647 9052963 ~ 9120420 (-)
LOC103024169 LOC108441016 coding downstream 1599749 8867476 ~ 8887318 (-)
fam196a fam196a coding upstream 333224 10827410 ~ 10880834 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding upstream 1402867 11897053 ~ 12038582 (-)
tcerg1l tcerg1l coding upstream 1749095 12243281 ~ 12417270 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 2081325 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 2173650 12667836 ~ 12667907 (-)
G35777 NA non-coding downstream 691 10485987 ~ 10486376 (-)
LOC111192368 NA non-coding downstream 20845 10465055 ~ 10466222 (-)
G35769 NA non-coding downstream 24067 10461604 ~ 10463000 (-)
G35767 NA non-coding downstream 45494 10439531 ~ 10441573 (-)
G35717 NA non-coding downstream 438971 9995305 ~ 10048096 (-)
G35855 dock1,LOC107711371,LOC107740868 non-coding upstream 448322 10942508 ~ 10967368 (-)
LOC111192403 NA non-coding upstream 451477 10945663 ~ 11004322 (-)
G35857 NA non-coding upstream 490341 10984527 ~ 11069095 (-)
G35850 dock1,LOC107740868 non-coding upstream 499567 10993753 ~ 11001082 (-)
G35863 NA non-coding upstream 520058 11014244 ~ 11015792 (-)
rpl38 NA other downstream 1055839 9426075 ~ 9431228 (-)
G35512 NA other downstream 1281156 9204570 ~ 9205911 (-)
tbata NA other downstream 1483171 8938933 ~ 9003896 (-)
G35429 NA other downstream 1559350 8924828 ~ 8927717 (-)
LOC103030829 NA other downstream 3790776 6688167 ~ 6696291 (-)
clrn3 NA other upstream 559473 11053659 ~ 11083182 (-)
LOC103036331 NA other upstream 1573347 12067533 ~ 12072427 (-)
G36074 NA other upstream 2215622 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 2812902 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 2980980 13475166 ~ 13500177 (-)

Expression


Co-expression Network