fam196a (fam196a)


Basic Information

Item Value
gene id fam196a
gene name fam196a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10827410 ~ 10880834 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669077.1
CTCCCCACCTCCCAAAACTCCTTATGATGTATGAGGAGTAGCAGGGCCTCAGGTAGTGGCAGCAGGACTCCTATCATCATTCTCCCAGCGCAAGTGAGCGCTTCAGGAGAGCAGCAAGATTAAGAGATGCAATTAACAGTCAATGACAAACAAGTCACAGGCTAAGACAACACTTCTGAGATTGATATCATTAATATTACTGTAAGTGAGATGAGCTCTTGGAGAGGGTGATGGAAGGTTCGTGCAGACGGGCCGGTGACGGTTTTGCGAGCTGCTGTTGGCAGGAAACTGATGCAGCTGTAAAACGCTGTAAAGCGCATGGTGGATATGACACATGATTAATTGCCATTCTCTGTCGTTTCTGTTGGCAGGAACCATGGTGAGCAAAGAGGTTGGGAAGTGCATGCTCACCAACTCTGAGTCGGACTCCGAGACGGCACCTTCCATGGCCCTGGAGGTGAAAGGTCCATCGGACGCGAGCCGGCAGGTGCGCAAGCGCAACAAAGCCTTGCAGGTACGCTTCAAGGACATCTGCGAGGCGCAGAGCGAGCAGGCGGCTGCGGAGCGAGGAGGAGCTAAGTCCATCTCTTATAAAGTGGCTTACCGCAAGTACATGACCGTCCCTGCACGGAGGTCCATCCCCAACGTGACCAAAAGTACGGGAGTTCAGACTTCTCCAGATCTGAGGAAGCGCTACCAGACTTTCCCactggagagaaagaaaggccaTACCGTGAAGCACGCAGCCACAGTGGAGAGCTACAAAGACCAGGATAATGGATTTGTTATTGATGTTAAACGGGCAAAAGCGGGCGAGACCGGTAAAGAGGGGGCACCGCCTCACACCGtcatgaaaaaaactaaagcatTAATGCACACTAACGAGTGCATAGCCACCATCGAGCACCACGCGAACACTGCAGAGTGCACAGAAAGGACACTGTTGCCTTGTCCTGTGGAGTCAGGGGTGGACCAATCGGATTACCAGATCTGTGCAGTGAGGAGTAAACATCGCAAAAGCTTCCAGAGGGACTCGGAGTCGCTTGACCGCTCAGGGAAGCGGCAGCTGTTGAACTCTGAGGATGGAGGTAGCAGGGCGTTGCCGGACGCCAGCTCCAAGGTGACTGGCCCAATCGCCTGGAACTCCCTCACGCAGGTGGAGTGCCTGGAGAGCCCGTCGGCACGCAGCAAGCGCAAAAAGGCTCTGCAGCTCAACGGCCTGCAATCGCAGACGCTGCCCAGGACCGGCTGCACCACGCAGGCGCAGTGCCATGCCGGAATGATCTCTGCCCGGCCCCTGCGGGCCATGGAGGAGGCGGACGTGGTGGCCCCTGCCTCCACAGCACCCATCGCCGTGCCGGCACCTGCGTGCGAGGGCGTGACGGGGACATCGACGGGGACCGTGCAAGGGGACAGCGAGTCCTGCAAGCAGATAGTGCCTGTCAATCAGGACAGGGACGTAAAAGCACAGCTGCAAGCCATGGAGAGTATGATCAGCTCAAGCCAGGAAACCATCAAAGTGCTGCTCGGAGTCATTCAGGAGCTGGAGAAAGGAGAGGCGCACAGAGAAGGGCTCTCCTATCGAACCGGGCAGGACACGGCCAACTGTGACACGTGCCGGAACAGTGCGTGCATCATTTACAGtgtgGAGCTGGATTTTAAGCAGCAGGAGGATAAGCTGCAGCCGCTGATGAAGAGGTTGTGTTCAGCGGAGGACTCGCCCTTCGCCTCGCTGCCTTACCCCCAGGAGGCGTACACCTCCACGCCCAAACGCAAGGCCAAAGCCGAGGCCAAGAAACACGCGCGCTGGAAACTCTGGTTCTTATgaaagattaagattaagatctGGTTCTTATGAAAGGacacgcacacactctctccagcatcctcctctcctccctctctctctcactctttctggaGTTTCCGCATTTTATCGTTCTTCTCATCACACTTTAAAGAGtgaaatgaaaaagagagattcTACATCTGAAGAAAAGTAAtaaggaataaataaaaatgaaataataaaatcatcGTATATTTCGGATTCCGGATTCTGGACAGTGAACCCGGTTATAAAGTCCCAGAGTTCACCTTGAaatacaaacaacaacaaccaaacaacaacaaaaaggaGGGATCCTACGGGGACTGCATTTCCCAATTTGGACAGGAGAATATTTTTGGACTAATTTCCCCAAACGGAGCGTGAAATCCCTCTATTTGCAGATCAGCAAGGTGAGAAATGAGATTGGATTAACCTGGCTTAACCTCATTCGTTTAAATACACAGGAAATCAAATCTACACACTAGCGATTCTACACACATGACTGGAGAGCGATATCTCTATTTACTGCTCAGTTTATTAACAGGGCCTGACCGCCcttccattttatttatttatttatttactgatttatttatttgttgatttatttatttatttatttactgagtTTTAGTTTGCTCTTCGTCCATCTGTATCATGGATATACTGGATTTTGGTCTCTCGGTCTcacaaaatgggaaaaataataattttcacgCACttggactaaaaaaaaagaaaaaaagagagaaagagagagaaaaagcaaatCCTTCCCTCACGGACTGAAACGAGACTGGACTTAGGATCATTTCACCATTACGAATAAAAGCACAACAACACTCAGTAGATTCTATTAGAGATGAGAAACGGGACTCAACGCAACACAGGAATGTAGAAAAACaggaacgaaaaaaaaaaaaaaacgaatgaaatgaataatttccaaaaaaaaagaaagaaaaaaaaaggacattcCTGTTTGAGTGAAAACGACTAGAAAATAAGGTTTCACACTTCTGTACGTATCAACTTTCTATATAAACCCTGAAGTTTCTGAAGATCTATACAGCTACTaactttgagatactaatttAAAAGATCAAATGAGTATCActtatttttctatattctTAATATcaagtattaaattaaaattcagattttataaa
>XM_022669080.1
agggagggagagcggTGGAGCTGCATCACAGAATGAATCTCCTGAACGGGAGTGAATGCCATCGCTGACATCGCTGAGTTTGGCGCTCTGCCGTCCGTATTCGAGAGAGTGCGTAAGAGCGAGCGCGTGCATGTGAGTGCGCGCATGCATGTGAATgcgtgtgtaagagtgtgtgagagagtgcgcGAGTGCGTGTGTGAGGGTGTACGGGTCACGCAGAAATGGCAGTAGCGTAGCGGCAGCAGCTCGGACTCGGCGCGGATGCGTCTGTGGATGTGTACCGGCCGAGAGGAAGTGACTAACGATCTGTTTACGTCTGAGGAGCAACTTCCAGCATGGCAGGTCCTCGTCCTCCTCGCTCATCCCTCGCTCTGCCCTCTCCCCTCCGCCGTCTTCCACCCGCCGGAGCCCTGCTGCACTGAGAGACGCCAGAGCGAGCGAGGAAGGACATGCAGTGTCCAGAGCAGCAGGCTCTGTCTCAGCTCCGTCAGTgacctgcatctggagGAACCATGGTGAGCAAAGAGGTTGGGAAGTGCATGCTCACCAACTCTGAGTCGGACTCCGAGACGGCACCTTCCATGGCCCTGGAGGTGAAAGGTCCATCGGACGCGAGCCGGCAGGTGCGCAAGCGCAACAAAGCCTTGCAGGTACGCTTCAAGGACATCTGCGAGGCGCAGAGCGAGCAGGCGGCTGCGGAGCGAGGAGGAGCTAAGTCCATCTCTTATAAAGTGGCTTACCGCAAGTACATGACCGTCCCTGCACGGAGGTCCATCCCCAACGTGACCAAAAGTACGGGAGTTCAGACTTCTCCAGATCTGAGGAAGCGCTACCAGACTTTCCCactggagagaaagaaaggccaTACCGTGAAGCACGCAGCCACAGTGGAGAGCTACAAAGACCAGGATAATGGATTTGTTATTGATGTTAAACGGGCAAAAGCGGGCGAGACCGGTAAAGAGGGGGCACCGCCTCACACCGtcatgaaaaaaactaaagcatTAATGCACACTAACGAGTGCATAGCCACCATCGAGCACCACGCGAACACTGCAGAGTGCACAGAAAGGACACTGTTGCCTTGTCCTGTGGAGTCAGGGGTGGACCAATCGGATTACCAGATCTGTGCAGTGAGGAGTAAACATCGCAAAAGCTTCCAGAGGGACTCGGAGTCGCTTGACCGCTCAGGGAAGCGGCAGCTGTTGAACTCTGAGGATGGAGGTAGCAGGGCGTTGCCGGACGCCAGCTCCAAGGTGACTGGCCCAATCGCCTGGAACTCCCTCACGCAGGTGGAGTGCCTGGAGAGCCCGTCGGCACGCAGCAAGCGCAAAAAGGCTCTGCAGCTCAACGGCCTGCAATCGCAGACGCTGCCCAGGACCGGCTGCACCACGCAGGCGCAGTGCCATGCCGGAATGATCTCTGCCCGGCCCCTGCGGGCCATGGAGGAGGCGGACGTGGTGGCCCCTGCCTCCACAGCACCCATCGCCGTGCCGGCACCTGCGTGCGAGGGCGTGACGGGGACATCGACGGGGACCGTGCAAGGGGACAGCGAGTCCTGCAAGCAGATAGTGCCTGTCAATCAGGACAGGGACGTAAAAGCACAGCTGCAAGCCATGGAGAGTATGATCAGCTCAAGCCAGGAAACCATCAAAGTGCTGCTCGGAGTCATTCAGGAGCTGGAGAAAGGAGAGGCGCACAGAGAAGGGCTCTCCTATCGAACCGGGCAGGACACGGCCAACTGTGACACGTGCCGGAACAGTGCGTGCATCATTTACAGtgtgGAGCTGGATTTTAAGCAGCAGGAGGATAAGCTGCAGCCGCTGATGAAGAGGTTGTGTTCAGCGGAGGACTCGCCCTTCGCCTCGCTGCCTTACCCCCAGGAGGCGTACACCTCCACGCCCAAACGCAAGGCCAAAGCCGAGGCCAAGAAACACGCGCGCTGGAAACTCTGGTTCTTATgaaagattaagattaagatctGGTTCTTATGAAAGGacacgcacacactctctccagcatcctcctctcctccctctctctctcactctttctggaGTTTCCGCATTTTATCGTTCTTCTCATCACACTTTAAAGAGtgaaatgaaaaagagagattcTACATCTGAAGAAAAGTAAtaaggaataaataaaaatgaaataataaaatcatcGTATATTTCGGATTCCGGATTCTGGACAGTGAACCCGGTTATAAAGTCCCAGAGTTCACCTTGAaatacaaacaacaacaaccaaacaacaacaaaaaggaGGGATCCTACGGGGACTGCATTTCCCAATTTGGACAGGAGAATATTTTTGGACTAATTTCCCCAAACGGAGCGTGAAATCCCTCTATTTGCAGATCAGCAAGGTGAGAAATGAGATTGGATTAACCTGGCTTAACCTCATTCGTTTAAATACACAGGAAATCAAATCTACACACTAGCGATTCTACACACATGACTGGAGAGCGATATCTCTATTTACTGCTCAGTTTATTAACAGGGCCTGACCGCCcttccattttatttatttatttatttactgatttatttatttgttgatttatttatttatttatttactgagtTTTAGTTTGCTCTTCGTCCATCTGTATCATGGATATACTGGATTTTGGTCTCTCGGTCTcacaaaatgggaaaaataataattttcacgCACttggactaaaaaaaaagaaaaaaagagagaaagagagagaaaaagcaaatCCTTCCCTCACGGACTGAAACGAGACTGGACTTAGGATCATTTCACCATTACGAATAAAAGCACAACAACACTCAGTAGATTCTATTAGAGATGAGAAACGGGACTCAACGCAACACAGGAATGTAGAAAAACaggaacgaaaaaaaaaaaaaaacgaatgaaatgaataatttccaaaaaaaaagaaagaaaaaaaaaggacattcCTGTTTGAGTGAAAACGACTAGAAAATAAGGTTTCACACTTCTGTACGTATCAACTTTCTATATAAACCCTGAAGTTTCTGAAGATCTATACAGCTACTaactttgagatactaatttAAAAGATCAAATGAGTATCActtatttttctatattctTAATATcaagtattaaattaaaattcagattttataaa

Function

NR:

description
PREDICTED: protein FAM196A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669077.1 False 3003 mRNA 0.48 3 10827410 10859113
XM_022669080.1 True 3139 mRNA 0.50 4 10827410 10880834

Neighbor

gene id symbol gene type direction distance location
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 333224 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 351533 10467821 ~ 10475877 (-)
LOC103039991 LOC103039991 coding downstream 377125 10443259 ~ 10450285 (-)
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding downstream 1404699 9314584 ~ 9422711 (-)
polr3a polr3a coding downstream 1706990 9052963 ~ 9120420 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding upstream 1016219 11897053 ~ 12038582 (-)
tcerg1l tcerg1l coding upstream 1362447 12243281 ~ 12417270 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 1694677 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 1787002 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 1787882 12668716 ~ 12668787 (-)
G35777 NA non-coding downstream 341034 10485987 ~ 10486376 (-)
LOC111192368 NA non-coding downstream 361188 10465055 ~ 10466222 (-)
G35769 NA non-coding downstream 364410 10461604 ~ 10463000 (-)
G35767 NA non-coding downstream 385837 10439531 ~ 10441573 (-)
G35717 NA non-coding downstream 779314 9995305 ~ 10048096 (-)
G35855 dock1,LOC107711371,LOC107740868 non-coding upstream 61674 10942508 ~ 10967368 (-)
LOC111192403 NA non-coding upstream 64829 10945663 ~ 11004322 (-)
G35857 NA non-coding upstream 103693 10984527 ~ 11069095 (-)
G35850 dock1,LOC107740868 non-coding upstream 112919 10993753 ~ 11001082 (-)
G35863 NA non-coding upstream 133410 11014244 ~ 11015792 (-)
rpl38 NA other downstream 1396182 9426075 ~ 9431228 (-)
G35512 NA other downstream 1621499 9204570 ~ 9205911 (-)
tbata NA other downstream 1823514 8938933 ~ 9003896 (-)
G35429 NA other downstream 1899693 8924828 ~ 8927717 (-)
LOC103030829 NA other downstream 4131119 6688167 ~ 6696291 (-)
clrn3 NA other upstream 172825 11053659 ~ 11083182 (-)
LOC103036331 NA other upstream 1186699 12067533 ~ 12072427 (-)
G36074 NA other upstream 1828974 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 2426254 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 2594332 13475166 ~ 13500177 (-)

Expression


Co-expression Network