LOC111192368


Basic Information

Item Value
gene id LOC111192368
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 10465055 ~ 10466222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48130
TCCTGGCTGTGCTCCGTGGAGATGAAACTGCTGTTATAAAACAGAGATGggggccaaaaaaaagtcttgaacagTGGTAAAAATGACAAGATTTTTATCTACCTGTCAGGACATGGGAATAAAGGATTATTTGCCTTTCCCAATGAGACTCTTTATGCATATGACCTTCTTGAAACTGTACAAGAGATGGCAAACAGACAGCAATTCTCAGAGATGGTGATATACATTGAAAGCTGTAATTCTGGATCAATGCTTGAACATCGTCCTAGTAACGTACAGAGTAAGCTGTTCTCTTAGACTTTAACAACGGCACctcatttacctcagaagtcaAAGATTGATGC
>XR_002649870.1
TCCTGGCTGTGCTCCGTGGAGATGAAACTGCTGTTATAAAACAGAGATGggggccaaaaaaaagtcttgaacagTGGTAAAAATGACAAGATTTTTATCTACCTGTCAGGACATGGGAATAAAGGATTATTTGCCTTTCCCAATGAGACTCTTTATGCATATGACCTTCTTGAAACTGTACAAGAGATGGCAAACAGACAGCAATTCTCAGAGATGGTGATATACATTGAAAGCTGTAATTCTGGATCAATGCTTGAACATCGTCCTAGTAACGTACAGAGTAAGCTGTTCTCTTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48130 True 344 lncRNA 0.40 4 10465055 10466222
XR_002649870.1 False 298 lncRNA 0.40 4 10465101 10466222

Neighbor

gene id symbol gene type direction distance location
LOC103039991 LOC103039991 coding downstream 14770 10443259 ~ 10450285 (-)
LOC103043647 ttyh2,LOC107654552,LOC107684477 coding downstream 1042344 9314584 ~ 9422711 (-)
polr3a polr3a coding downstream 1344635 9052963 ~ 9120420 (-)
LOC103024169 LOC108441016 coding downstream 1577737 8867476 ~ 8887318 (-)
nodal NA coding downstream 1867246 8593576 ~ 8597809 (-)
mrpl38 mrpl38 coding upstream 1599 10467821 ~ 10475877 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding upstream 20845 10487067 ~ 10494186 (-)
fam196a fam196a coding upstream 361188 10827410 ~ 10880834 (-)
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding upstream 1430831 11897053 ~ 12038582 (-)
tcerg1l tcerg1l coding upstream 1777059 12243281 ~ 12417270 (-)
G35769 NA non-coding downstream 2055 10461604 ~ 10463000 (-)
G35767 NA non-coding downstream 23482 10439531 ~ 10441573 (-)
G35717 NA non-coding downstream 416959 9995305 ~ 10048096 (-)
G35615 NA non-coding downstream 682047 9781739 ~ 9783008 (-)
G35613 NA non-coding downstream 702455 9762351 ~ 9762600 (-)
G35777 NA non-coding upstream 19765 10485987 ~ 10486376 (-)
G35855 dock1,LOC107711371,LOC107740868 non-coding upstream 476286 10942508 ~ 10967368 (-)
LOC111192403 NA non-coding upstream 479441 10945663 ~ 11004322 (-)
G35857 NA non-coding upstream 518305 10984527 ~ 11069095 (-)
G35850 dock1,LOC107740868 non-coding upstream 527531 10993753 ~ 11001082 (-)
rpl38 NA other downstream 1033827 9426075 ~ 9431228 (-)
G35512 NA other downstream 1259144 9204570 ~ 9205911 (-)
tbata NA other downstream 1461159 8938933 ~ 9003896 (-)
G35429 NA other downstream 1537338 8924828 ~ 8927717 (-)
LOC103030829 NA other downstream 3768764 6688167 ~ 6696291 (-)
clrn3 NA other upstream 587437 11053659 ~ 11083182 (-)
LOC103036331 NA other upstream 1601311 12067533 ~ 12072427 (-)
G36074 NA other upstream 2243586 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 2840866 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 3008944 13475166 ~ 13500177 (-)

Expression


Co-expression Network