G35946


Basic Information

Item Value
gene id G35946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 12050053 ~ 12067387 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU48384
aaataatcaataaatatataagccACTCTCATTTATGATCGATTAAAAAAttctacatttttatattaagcGCAGTGTAAACATAATGTCcttgtatttcagttaaatataaggtaaagtgtaaaatatataaatcactgCAACATGTATGAGTTGCCAATAAATGAGGCACTAGCAAGAACCCATATAATCAAAGTGCAGCCAATTACATGTGAAGGTCATGCACGTTTATTTAACAGTacttaataatacattaatttgcAGGGTAACAAGGTGATAAGTGAAAAAGTAAGAGGTGGTTGTTGTAAATTTTCACAAGTAATAATGCAATTAGGAATTTCACATAGTGTAGATTAAATTTCACATTAATAAAGACCATGATGAATAAAGCTTAAGACATAATTGTGAAAATAGTCCAATCAAAGCTTGACTACACAAAGAACAAGATGTTAATAAACCCTTAATTTGTAATCCAAGTTCCTTAAAATGAAGTGTTGCCAAATGTAGATTCCACTACAATGTAGTTTAAGGGAAATTCATCCATCATGATTTACATTATATTCCTGAAGGGACTCGGGGCGAACCATGGTTAGGACTAGAGAACCAGAATTTGGTCCGACTGAAAGAGCTGTTCTCTatctggatctactgaaccatggtccagtttctctgcagtgtgaaaaaaaaaaattgtattcttGATATTTTAGACTTTTAGACCAATTACAAGAAGATAAATTGGTCTTTTAACAAACCAGAGGAAtaaagaactggtgttgtgccgaaatccgTCTCCCCTTGGTAAAGTGCAGTGCATCACGCAGCAGTATGAGCACAAATGCTTATAAACTGGGAGtaagtttatttactgtaacagtagattaacttttatttataaacagatataaaatGAATCTGAGGATAAGGGGAAGGGGAAAGCATTTACTGAaaggggagtcggattctgacAAAGAGCtaaaattcagcacaacacctgaaaGCAAAGAATGTCTCAAACTCTACAAaccaattattaattattaaatgtaattttgagagagactccgcccacgtagctgataatgatgatgatgggctgtagtaaaacacaaactgcagtgtgaaactgaaactaaatggATAAAACTCTGTTCctgactttcaggtgtgaaaacgcccttagtttagtttttattcagTACAAGATAAAtagtattttgtgtgttttagacgTTTAATAACTCTAGATATTTCCAAAACCATGCTGAACCTTTTGTAGctgatttttttatagattACTATGCCTTTTGTGAAGACTGAAAAAGGGAATAATTGTCAGTTCCAATGTTATATCGCCATTTGAAGTGTATGTTTCCTTCTTTTCTAAACTCctctagactagactagactttAGAATAGATTTCTTTAGATGATTTGTGTATTATCTTCCATATTCTGttcctgtaaaaaaaagcactgaTCTCTATAAACCACTGTACCTTTTAAAACTTGCACTAAAatctgaacattgttgttttatgctataaactacagacaacatttctcccaaattccaaataaaaatattctcatttagagcatttatttacagaaaatgagaaatggatgaaataacaaaaaaagatgcagaactttcagatctcaaataatgcaaagaaaacaagttcatattcataaaattttgagagttaataatcaatatttggtggaataaatctaagggtttttaatcacagttttttttcatgcatcttggcatcattttctcctccaccagtcttacacactgcttttggataacttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48384 True 1826 lncRNA 0.32 3 12050053 12067387

Neighbor

gene id symbol gene type direction distance location
ebf3 ebf3,ebf3a,LOC107582179,LOC107745698 coding downstream 11471 11897053 ~ 12038582 (-)
fam196a fam196a coding downstream 1169219 10827410 ~ 10880834 (-)
wbp2 wbp2,LOC107667802,LOC107578800 coding downstream 1555867 10487067 ~ 10494186 (-)
mrpl38 mrpl38 coding downstream 1574176 10467821 ~ 10475877 (-)
LOC103039991 LOC103039991 coding downstream 1599768 10443259 ~ 10450285 (-)
tcerg1l tcerg1l coding upstream 175894 12243281 ~ 12417270 (-)
ppp2r2d ppp2r2d,LOC107553689,LOC105009682 coding upstream 508124 12575511 ~ 12603380 (-)
trnaq-cug_2 NA coding upstream 600449 12667836 ~ 12667907 (-)
trnaq-uug NA coding upstream 601329 12668716 ~ 12668787 (-)
LOC103039695 LOC108429709 coding upstream 631201 12698588 ~ 12702831 (-)
G35944 NA non-coding downstream 25477 12020754 ~ 12024576 (-)
G35941 NA non-coding downstream 54833 11975089 ~ 11995220 (-)
G35914 NA non-coding downstream 198687 11851126 ~ 11851366 (-)
G35901 NA non-coding downstream 313521 11736322 ~ 11736532 (-)
G35900 NA non-coding downstream 322478 11727355 ~ 11727575 (-)
G36043 NA non-coding upstream 392385 12459772 ~ 12461854 (-)
G36045 NA non-coding upstream 506468 12573855 ~ 12574842 (-)
G36047 NA non-coding upstream 507542 12574929 ~ 12575451 (-)
G36061 NA non-coding upstream 537608 12604995 ~ 12605356 (-)
G36082 NA non-coding upstream 618639 12686026 ~ 12686397 (-)
clrn3 NA other downstream 966871 11053659 ~ 11083182 (-)
rpl38 NA other downstream 2618825 9426075 ~ 9431228 (-)
G35512 NA other downstream 2844142 9204570 ~ 9205911 (-)
tbata NA other downstream 3046157 8938933 ~ 9003896 (-)
G35429 NA other downstream 3122336 8924828 ~ 8927717 (-)
LOC103036331 NA other upstream 146 12067533 ~ 12072427 (-)
G36074 NA other upstream 642421 12709808 ~ 12711545 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 1239701 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 1407779 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 2718565 14785952 ~ 14797212 (-)

Expression


Co-expression Network