LOC103042649


Basic Information

Item Value
gene id LOC103042649
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 13271875 ~ 13297430 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669131.1
GTGTTTCATACAAtgttattttcttctttatatGATTTTAGAAATGCTAACTGGCTACATTTAGAGCAGAGTTTGATCAGTCCACCTTAACAGCAGGAGCGCGAGATACCGAAACTAACCTAAACTTCCTCCAGTGGTTTAGACTCCAGACTTTAACAGGGATTTCTAGCGTTCTCTGTTTTGTTGCTCTCTGCCTGTGTACACTGGTCACAACAACGtttattaacattaactaaTGAATTACTCGAGTCTTAATTCCGCCGTAAATGTGGAAAACAGTCGACCTGTGGATCTGATGGGAGCGGTGTAGCGGTGTAACGTTAATCATCAGATAAATCTGTTTGGCTGTAACACCACCGAGCCAAAGACATGGCTTCTCTCGCCACCCAGTTTGAGGATTTGAAGAAAAAAGCAGAATCATGTCTGTCCACATCCGGCTCAGTCCAGGAGGCTAAACCCTTCATAACAGCCATGGCAGAAATGGCAATGCCACTGTCCAGCCGGTACCAGCACATCTCTGTTGATAGCATCATATCAGACAACATCTCAGGAAACCAACAACAGGAAattgtGGATTCCCTCAACCTCATAGTGAAAGCTCTGAGCATCCTGGAGAAGTACGCCTGCAACTTACTGAATCCCAACAGACCCAAATACTGGCGCACTGTAAAATTCAACAATCCGGTGTTCAAGGCTTCAGTGGACATTTTAAAGGGTGGCAGAAATGTGTTGATGCTATATGGATACACATTTCAGCTGGAGGACGGCCTGAGCTTTCCTGATGATGTCACAGCTCCTGATGTGCACACGGTTTCAGTGGTGGCCACAGAGGTCATGACTCTAAAAATAGAGTTGGACCTGCTCAgtaagGGCATTCACGCACACCCTGAGTTTTTTGAGAAGACTATTCCATCACTTCAACtcatagagaaagaaaagGTTGATCAAGATCCTGTGACAGATGCTGTGGCCATTCCACCTGTCCCTAAACCCCGGACAGGTTTGGTGGCAGCAAAGACAATTGTACCCCCATCAGACCCCCTAAAACTCTTAAGCACCCCAGACACCTCAATGTGTGACATCTGTGGGGGAAAGCCATGTGTTCTCTGCCAACCCTGTGGATCTCTAACTTTCTGTCAGAAATGTGACACTATGGTCCATCTTCATCCCCAGAAAAACAAGCATGTGAGAAGTCAGATTAGAAAACAAGAGTGTGGTATCTGTGGAATCTTCCCAGTTTCAGCATGCTGTGAGACCTGTGCTCAACAACTCTGTGCTGAGTGTGACACGCTGTACCACTCACACCCAAACAGAGCAggacataaaaaagtaaactcaGGAGTCACAACACCACAGAGTGTGAAACCCTGCTTGAATACTGCTACTGGATCTGCTGGACCTGAGGATTCATTGGACTGGGAGTGTACGAGTTGTACAGTAGTGAACTTGGCCAGCAGCGtgctgtgtgaagtgtgtgagcGCCCCCGTCTTGCCAGACAGGCCACTCTAACACAGTCAACAGGGtGGGAATGCCAAAGGTGTACCTTTATTAATGTGAAGGGTGATGAGTGTGAGATGTGTTTGGCCCCTCGGGAGAACACAACTGCGGTGGAAAGCAAGCCGTTTATTaggggctttactgctcccAGCCTCCGACCAGCCAGGGATGAAGATGTAACTGGAAATGACTCTCAGACTAAACTCACATCTATAGACATACAGAAAATGGACCATATGAGGGAGGATGGATTAAAACTGCTCCATCAGCTCAAGgagggagaaaagagaaagcTGGATCCAGAGGAGGTGTGTGCCGCCTTTCAGATGTCAAACGGCAGTAACTGTTTCGACTGGCTGCAGTCTGAACTTCCGCATCTTCTAGACGAAATTTGTGCTCTAGCATCGTCAGTGCAGCCAGAAAGTGAAACAGAACCTTCTGGAAGAGAGGATCAGGTCCTGCTGTCCAGGACCGAGGCCAAGCAGGCATGGGTCAGTTCTGGAGGAAACACTCAGAAGGCTGTTGCAAACATCCTGAGAAACAGAGCAGAAAAGCTGCGTCTGCTCAGGACACTGGGATTTGTCGACAGGTTAGCGTGCGAGAAGGCACTTTCCATGAGTGGGGGAGAtctagatggtgctctttctcaTCTACAGCGGCCACTGCTGGAACATTTCCATCAGAACATCTGGAAAAAGCAGCCACAGATCTATTTTAACATCAATCATCAAGATAAAGACCGGCTGTACCGCAGGCTGCTAGGCCTGTATAATCTACCCAGCTGGGGTCGAAGCCAAATGGCTCTGACCTTGCTCCAAGAGCCTGATGCTGAATATTCAGTGGAGGATGTGATTCAGGCAGTGAGGGAACACCATGACAAAGACTTCATCAACCGCATCCTCAAAAAGGAGTGTCAAATATGCTATGCCAGCTTTCCTCAGAGAAagATGCAGGCTCTGACCTTCTGCCAGTGCTCCATGTGCAGCGAGTGCTTCATACAGCACTTTACGGTGGCTCTGAGGGATAAACACATCAGAGACATGGTGTGTCCAGTGTGTGAGGAGCCAGAGATTAATGACCCTGAAGCCCTGGAGACGTACTTTTTCACTCTCGACGTGCAGttaagATTGAATTTAGAACCTGAAGTGTATGATCTGTTCGGTaagaagctgatggaacacactTTAAAGAAGGATCCCaagtttctgtggtgttgccaTTGCACCAATGGCTTTATTTATGAGAAAGATGAGCTCAAAGTTACTTGTCAGAATTGCCGCAAAAGCTTTTGTTCCAAGTGCAAAAAAGCTTGGGAGGATCAACATGAAGGTCTTACATGTAATGACTTTCAGAAGTGGAAGAGAGAGAACGATCCAGAATATCAGAAGCAAGGCCTGGTTGGATTTCTGCGGGAAAATGGCATCAaatgtCCCAGCTGTAAATTTCAGTATGCTCTGGCTAAAGGTGGCTGCATGCACTTCACCTGCAGTCAGTGCAGATACGAGTTCTGCTGTGGCTGCAACAACCCTTTCCACAAGaaACCATGTCCAGGTAATCAGTGTATATCAAAGGGTTTTCATGCCCACCATCCACGAGACTGCCTCTACTACCTGAGGGACTGGGAGCCAGTCAGACTGCAAGCCTTACTACAGaaaCACAAAGTGGAATTTAATACCGATCACCCTGATGGGACAGGAAATGGTTTGTGTGGAGTGATGGAGCAGAAAGAAGGTGGGCAGGCGTTGGATGATGCATGTGGAATTCAAGTCGAGGAAGGCCATGCAGGGCTTTGCGATAAACACTACCGGGAGTACCTGGTCAGTCTGATCAATGCCCACTCTCTCGATCCTGCTGATCTGATGGATAAAGATGAAATAGTCAATACGTGTAAAAGACACCATATATACtctgaaaaagaggaagaggaggatgatgagGCATATCACAACAGACTGCAACAGaaattaaTGGAGATTCCCCTGGGTGAAAAAGTTTCTCGAACAATATAAAAGAGAATGATTCGTTCAACTTTTAGATTTATCTGAGAGCGAaaacaaatattcaaatataaatgaaaagatggatataaataaatacagagatAAAACACCTGTTTAcccaaaaatttaaaaataatgggaTATATTATATTCTTTACTTCTTAACAGTGcactaaattgaattaaattaaattagcacATTTTACTAATGaattatgtccaaatatttactctttctcgctttctttttttctctctctttctctctctgggggataatagataaataaattaaaaggtgGAGATgaataatagatatataaaaccTCATGTTttcctattatttttttaaaagaatgggATATAAGATATTCTTGACTTATTAAGACTgcactgaattaaattaaatgaataaattctaCTAATTGAATATGCCACcattttaactctctctctctctctctctctctccttctggggagataatagataaataaattattattttttgacacatttttattattattatgacacaTATTACTAATTGAATATGCCAAaattttaactctctctctttttcacacacTTTCATAATGTAATGCATTTCCTATTACActtgtgtgtgaaaatgttttagttGTTTTGTGAGAAAACtgcataattattaaaaatgtcattaatcatgtctattaacattttaacattaaaatcctgtTGCATTGTTTGATGATGTGCAATTCCATAACAATCTAGTCCATtaagctgtttatttattattattttttatattttaaaagaagcATCTTCCTGAAGAagacatgaaacaatgaaatgtCTTGTCATGTTTTAGCTGATTCTCTATGTACAGGCTGAACAGGATAAAGTATTTTTAGAATGATTTCCATTACTGTTTGTATGTACAGCTTTTTGATGGGTAACCTTGAGGCAACCTGATGAATTTGTCTAACAGAAGCACAGTGGTTATAATGTCTGGATGTCTGTAATCAAAATGTCAGAGAGAGGTTtctatagagtgtgtgtgtgggtggaagCAGCTGAAAAATATAATCAGAGCAGATGAGGCTCTCAGAGGTATTTTTTAGTCTAATTGAGTACTTTAGGGTTTTCGAGCAAATTTTGATTTTACAGTAATGGCATACTgccaattattttaatattcttaTATAACATTCCCATGGTGCTTGGCTTGTTTTGTCTATCAGAAAATAATTGACAATGAACaataaacaatgaaatgaaTGTTATGCAGTCTCTTCTGTGCATGTTGATTGTGTAAATGCCAGTAATTGTGAAGGGCACGCCAGAATGTGgtagaaaaataagagactgacAGTGCTGTAGGCATTGGTGGGGTTGGTGATGAAGAAGGGTTCCTTGTGGATGGGCTTGGTGATGAAGTACATCACCACAGTTATCTTATAAAAGTgagtacacttttttttttattgtatctctttttttttacaggatttCACTGAAGATATGTTACTTGATACAATGTTAAATAGTCCATGTGCAGCTTGTTTAAcggtgtaaatttgctgttccagtccaatccagtaatcagattaaagttacttatccaagtca

Function

GO: NA

KEGG:

id description
K11974 RNF31, HOIP; E3 ubiquitin-protein ligase RNF31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669131.1 True 5112 mRNA 0.42 23 13271875 13297430

Neighbor

gene id symbol gene type direction distance location
LOC103042955 LOC108431373,LOC106578596,LOC103365861,LOC106590056 coding downstream 11049 13254448 ~ 13260826 (-)
LOC111192419 NA coding downstream 62368 13207594 ~ 13209507 (-)
trnam-cau_20 NA coding downstream 71637 13200166 ~ 13200238 (-)
trnam-cau_19 NA coding downstream 74100 13197702 ~ 13197775 (-)
LOC103038558 NA coding downstream 342907 12926233 ~ 12928968 (-)
avl9 avl9,LOC102783546 coding upstream 15122 13312552 ~ 13336023 (-)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 42063 13339493 ~ 13351094 (-)
cdh20 cdh20 coding upstream 64306 13361736 ~ 13385263 (-)
LOC103043889 ppp1r9bb,LOC107741705,LOC107684769,LOC107713069,LOC107675672 coding upstream 94389 13391819 ~ 13420942 (-)
dnajc9 dnajc9,LOC107684784,LOC107751706 coding upstream 211526 13508956 ~ 13514238 (-)
G36114 NA non-coding downstream 260863 13006516 ~ 13011012 (-)
G36125 NA non-coding downstream 266128 13005499 ~ 13005747 (-)
G36124 NA non-coding downstream 269856 13001731 ~ 13002019 (-)
G36123 NA non-coding downstream 276988 12994574 ~ 12994887 (-)
G36122 NA non-coding downstream 280454 12991074 ~ 12991421 (-)
G36223 NA non-coding upstream 148617 13446047 ~ 13450206 (-)
G36236 NA non-coding upstream 203866 13501296 ~ 13504050 (-)
G36253 NA non-coding upstream 261788 13559218 ~ 13573367 (-)
G36257 NA non-coding upstream 290356 13587786 ~ 13609936 (-)
G36283 NA non-coding upstream 381366 13678796 ~ 13758346 (-)
G36074 NA other downstream 560330 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 1199448 12067533 ~ 12072427 (-)
clrn3 NA other downstream 2188693 11053659 ~ 11083182 (-)
rpl38 NA other downstream 3840647 9426075 ~ 9431228 (-)
G35512 NA other downstream 4065964 9204570 ~ 9205911 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 9658 13307088 ~ 13311525 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other upstream 177736 13475166 ~ 13500177 (-)
c4h10orf88 LOC103041415 other upstream 1488522 14785952 ~ 14797212 (-)
G36677 NA other upstream 2449970 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 2539675 15837105 ~ 15840516 (-)

Expression


Co-expression Network