RNA id: TU49403


Basic Information

Item Value
RNA id TU49403
length 1199
lncRNA type sense_over
GC content 0.45
exon number 9
gene id G36677
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15747400 ~ 15774593 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCACCACAACTGGACGCCCCACAACCACAGTTCAAACCACAGGTTTGACGaGCACCACAACTGGACGCCCCACAACTACAGTTCAATCCACAGGTTTGACAAGCCCGACAACTGGAAGCCCCACAACCACAGTTCAATCCACAGTTTTTACAGACACCACAACTGGACGCCCCACAACTACAGATCAATCTACAGTTTTTACAGCCTGTTCAGCTTTGAACTGCACTGCCAGAGAAGAGTGCAAGGCGAGAAGTGGAATTTATGGCTGTGCCTGTGCGAACAACAATCCAAGATTTAATGCTGCcacttttgATGCCTACAACTACTGTAACAGCAGTTCTGGGGTGCTGTCACTCTCTCGCTGTGAGCTCTTCGAGGCTGGATTTCCTTCAGACTTCCTTCACCTCAATGATCCTAGTTGTGGAGGGGATATCCAAGATGACAGAGTGGTGTTCACTTTCGACAACAGGTTTAGGATCTGTGGCACAACAATGAAGtgttgtgtCCAAAATACTGCCAGGTACTGAGAGCGCATATCAGCTCCGTCTAGTGACCTACCCCAATTCTTCATTCATTACTCCCTATTCCGGAAATATTACGATTGAAGTGAACCAGCAGGTCTTCATAGCTGTGGAGGCTGATGGAATTGACAGTTCACAGTTTGCTACTGTGCTGGACAGCTGCTGGGCCACTCCCTACAACAACATCAACTATCCTGTTCGCTGGGATCTGATCATTAATGAGTGTCCCAACGAGAAAGATGGCACAGTGGAGGTGCTGCAGAATGGAATCTGGACAGCCAGTCACTTCTCTTTCAGGATGTTCACCTTCACTAACCTATCTAACAGAATCTTCCTGCACTGTCAGGTGCACCTGTGCCCGCGGATGAGTGGTCAGTGCTCTCAGccatgtaataaaaatgatgacgATGATCAATTCAGAGGAAGACGTCGCAGATCTGTGGACTTCCACGACAAAGCTTCTATCAGCATGAGCTTCTAACTCTCTGGCCCTTTGAAACCTCTGTTTGTGTAACATGGCCTAGACTGTTTATTCTGTATGTAATTAAAGTGCTGTATTTACTAATGAACACaactatacaatatttttcatgATTAAGCTACAGGTGCAGATTAGTTTTTACAGATTAGGCgaacaatgaaaaacatttagattgattattgattatattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49375 lncRNA downstream 68094 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA downstream 68094 15673783 ~ 15679306 (-) True G36664
TU49365 lncRNA downstream 198321 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 220103 15515982 ~ 15527297 (-) False LOC111192377
TU49355 lncRNA downstream 220181 15514858 ~ 15527219 (-) False LOC111192377
TU49392 lncRNA upstream 11710 15772893 ~ 15774593 (-) False G36677
XR_002649904.1 lncRNA upstream 29914 15791097 ~ 15795369 (-) True LOC111192406
TU49420 lncRNA upstream 39847 15801030 ~ 15801264 (-) True G36681
TU49434 lncRNA upstream 58133 15819316 ~ 15835494 (-) True LOC111192407
XR_002649905.1 lncRNA upstream 58231 15819414 ~ 15835522 (-) False LOC111192407
XM_007255138.3 mRNA downstream 10325 15723259 ~ 15737075 (-) True LOC103025516
XM_022669179.1 mRNA downstream 135978 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA downstream 139733 15582625 ~ 15607667 (-) False LOC103026344
XM_007255140.3 mRNA downstream 166642 15572780 ~ 15580758 (-) True LOC103026640
XM_022669178.1 mRNA downstream 181483 15552591 ~ 15565917 (-) True smarcd2
XM_022669435.1 mRNA upstream 11775 15772958 ~ 15778847 (-) True LOC103033657
XM_007255130.3 mRNA upstream 75922 15837105 ~ 15840516 (-) True LOC103023526
XM_022669186.1 mRNA upstream 80210 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA upstream 80210 15841393 ~ 15851677 (-) True LOC103023209
XM_022669187.1 mRNA upstream 113176 15874359 ~ 16026122 (-) True ank3
trnal-caa_19 other downstream 790643 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 791050 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 791456 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 791862 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 792063 14955227 ~ 14955337 (-) True trnal-cag_9
TU49443 other upstream 75922 15837105 ~ 15840485 (-) False LOC103023526
TU50113 other upstream 1254945 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 1334062 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 1418195 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1613001 17374184 ~ 17381597 (-) True LOC103024241

Expression Profile