RNA id: XM_007255140.3


Basic Information

Item Value
RNA id XM_007255140.3
length 1929
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC103026640
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15572780 ~ 15580758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCCAGCCGCCAGTGCCGCGATCGATTAGTCGGGTCTGAGCCCTGATGGAGGACGGCAGCCGCGGAGGCTTTGGAGCTAACGACCCGACCGTCtgacttttgtgtgttttgctcCCGTTTTTAAAGTCAAAATTCATCCATGGGAGTGAGGGCGAGCGGATTGGGGCGCTAATTCGCCGTTAGGGGCAGATGAGAGGCGGCGGGAGTGAGGCAGCCCGACACGGCCATTGTGCTGGAGCCTCTGCACTACAGCATGTAGAGACGGCAGTGCCTTCCCTTTCTGGTTTTTGCAAATGAAAATGGAGGAGATGGCCCTGTCCGGCATGGACAACAGTAAGATGGAGGGCATTGCTCAGGAGATCCTGGCTGACCTAGTGGAGGACGCATGCTTGGGGCTGTGCTTCGAGGTGCACAGGGCCGTCAAGCAGGGCTACTTTTTCCTGGACGACACTGACCAGGAGAGCACCAAGGACTTTGAAATTGTGGACCAGCCTGGGGTGGACATCTTTGGTCAGGTGTACAACCAGTGGAAGaacaaagagtgtgtgtgtcctaACTGCAGCCGGAGCATTGCCGCCTCCCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGCCGCAACAGCAGCCGCATTGCCAACCGCAGAATAGCCAGTGGCAACAATACAAACAAATCTGAGAGTGATCAAGAGGACAATGATGATGTCAATGACAACGACTGGTCCTATGGGGCAGAAAAGAAAACCAAGAAGAGAAAAGCAGATAAGAATTCAAATTCCCCAAGAAGATCCAaatcattaaaacataaaaatgGAGTGAGGATGACTCATTGACGACGCTCCAAGTTCGTCCTTCAGCTTTGCTGGGCTCAAAGCGACATGAGAAGAACCAGGGGAGTCCGCGTGTGTTGCTAAGAGACGAGTCGTTTCCACAGTAACGACATTGGCAATGGGGGGGGGCCTCCAATCACTACCCACAATGCCGTTTGGCTCACCTTCAGTAACAAACGCACGACCTGAATTGTGCTGACTGGCGGAAGGGCCATCGATTAGCTTCACCGTTCGGTTTACACAAGtgttttctttctcactctgtttctctctttctctctttctttttctctttattttcctggAATATTTTGCACAATGAATCGATGTCGTGTTGATCGTTTTGTCTTGACAGTGTAACTTGATAGTTCTTCAGAGTGGCGCGACCTGGTGGCGTGGAACGCGCACAACAATGGGAAGCTCTCAGGGAGGACCGGGGCGGGGCCATTGGTTTGAATGGCAGGTGGTAGTAAGCAAGTGGCGGATGCCTCCCTTCACTTGAGacttttgatttttcttttgcacGTCTTCACTAGGTCTTAAACGGCTGAGGAGGAcgtgtttttaaatgatggcCAAGAAAAGATATTTGCAAAGAACAGGACTGATAAATAACTCATCAATCAATGCTGCTTATTTCACCATTTCGAGTTGTAAGGGGCTTTTTGCACGAATCCACAAAGGTGCATCCTTTTTTTTCCCTGGTGATCCTCAAGGCAAAAGAGCCGTGTTGACACCTTGAAGAACAATTATGATCTTCTAATATCGCACTCTTAcaggaaaaaatattataaaataaaactttgagACTCTGTATAAACACTTGAAATTGCCTCTGGCAGAAAGACGTACGTATTCCTTTGAGGAGAACGTATCAAGACTAGAATTTCtccttttatcattttttttgtttcttcttttcttggTCTTGTTTCTGTGTACTAGATGTTTACAGTGTAAGGAATCATGTGTGTCTTCACTGTGTTGTAACTGTACATACATTTGACTAGGTGAAAAATGCTGCTATCCTGGCCAGGCCATGAGCCGTATGCTTGTGGACATGTCAACACGTGTAATAAACGATCAGAaccatg

Function

GO: NA

KEGG:

id description
K11363 SGF11; SAGA-associated factor 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49365 lncRNA downstream 23701 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 45483 15515982 ~ 15527297 (-) False LOC111192377
TU49355 lncRNA downstream 45561 15514858 ~ 15527219 (-) False LOC111192377
TU49375 lncRNA upstream 27333 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA upstream 93025 15673783 ~ 15679306 (-) True G36664
TU49403 lncRNA upstream 166642 15747400 ~ 15761183 (-) True G36677
TU49413 lncRNA upstream 174855 15755613 ~ 15761608 (-) False G36677
TU49416 lncRNA upstream 174855 15755613 ~ 15761608 (-) False G36677
XM_022669178.1 mRNA downstream 6863 15552591 ~ 15565917 (-) True smarcd2
XM_007255143.3 mRNA downstream 25210 15541100 ~ 15547570 (-) True psmc5
XM_022669170.1 mRNA downstream 457668 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA downstream 461690 15094604 ~ 15111090 (-) False LOC103031644
XM_022669169.1 mRNA downstream 487758 15040534 ~ 15085022 (-) True med24
XM_022669179.1 mRNA upstream 1867 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA upstream 1867 15582625 ~ 15607667 (-) False LOC103026344
XM_007255138.3 mRNA upstream 142501 15723259 ~ 15737075 (-) True LOC103025516
XM_022669182.1 mRNA upstream 165526 15746284 ~ 15769469 (-) True LOC103024156
XM_022669183.1 mRNA upstream 165526 15746284 ~ 15769468 (-) False LOC103024156
trnal-caa_19 other downstream 616023 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 616430 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 616836 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 617242 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 617443 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 174855 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 174855 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 174855 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 177632 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 256347 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile