RNA id: XM_022669178.1


Basic Information

Item Value
RNA id XM_022669178.1
length 2714
RNA type mRNA
GC content 0.45
exon number 12
gene id smarcd2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15552591 ~ 15565917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgcgtggttgCAGCGTCCCAGCATGCCGCCCAGTCGAAACATGCCCATGGGTGGGATGGGGCCAATGGGATCCCCCATGCCTGGGCCATCCTATGGTGGCAGCATGCGCCCCGGCATGCCTCAGGCAGCGCTGGACCCGGTCCGCAAGAGACTGCTCCATCAGCAGGCAGGGGGGCTGGTGGGGCCTCGGAGAGGGATTAAAAGACGCAAGATGGCTGACAAAGTCCTTCCACAGAGGATTCGAGATCTGGTTCCAGAGTCTCAGGCTTATATGGATCTCTTGGCTTTTGAGAGAAAGCTGGATCAGACCATTGCTCGCAAGCGCATGGAGATCCAAGAGGCCATTAAGAAGCCCATCACGcaaaAGCGCAAGCTGAGGATCTACATATCCAACACCTGCACACCTGCCAAGCCAGAGGGAGAAGAGGCTGAGAAAGTGGCATCGTGGGAACTTAGAGTGGAGGGCAAACTCCTGGATGATCCTGGGAAGCAGAAGAGAAAGTTCTCATCCTTTTTCAAGAGCTTGGTCATTGAACTCGATAAGGAACTGTATGGTCCAGACAATCACCTGGTAGAGtGGCACAGGATGCCTACCACTCAGGAGACGGATGGTTTTCAGGTGAAAAGACCTGGAGACGTCAGTGTGAAGTGCACCCTCCTTCTAATGCTGGACCACCAGCCTCCACAGTATAAGCTGGATCCACGACTGGCTCGGCTTCTGGGCGTCCACACCCAGACTAGATCCAGCATAATGCAGGCTCTCTGGCTTTATATCAAAAACAACAAGCTACAGGACAGCCACGAAAAAGAGTACATCAACTGCAACCGCTACTTTAGACAGATTTTTGCATGCCACAGAATGAGGTTCTCGGAGATCCCCATGAAGCTGGCTGGACTCCTGCAGCACCCCGACCCCATCGTCATCAATCATGTCATCAGCAGTGTGGATCCTAACGACCAGAAAAAGACAGCTTGCTTTGATATTGATGTGGAAGTGGATGATCCACTGAAGAGCCAGATGACCAGCTTCCTCTCATCTACTACTAACCAACAAGAAATTGCTGCCCTGGAAATGAAGATCCATGAGACCATCGAGTCCATAAATCAGCTGAAGACCCAAAGGGACTTCATGTTGAGCTTCAGCAACAGTCCGCAGGACTTCATCCAGGACTGGCTCAAGTCTCAAAGCCGAGACCTCAAGCTGATGACAGACACTGCCGGGAACcctgaggaggagaggaggagcgaGTTCTACCAGGCTCCATGGGTCCAGGAGGCTGTGGGCCGTTACGTATTCTCCAAGGTCCATCAGAGGAGGCAGGAGCTGGAGCAGGTACTGGGCATTCGTCTTACCTAAGCCTGAGGCTGCGGGTAGGGAACATCTGAGCGCTTGTCTAGGAGCTGGTGTTTGCATCCTAATCAACAGGATAAGAAGGGGGAATCACTAGATCACTGCTGGATCTTGCAGACTTCTCCTCGGCCATTCAGAAAGAGGTCCAGCTGTATGGCGCGAAAAGTCCTACTAGAAATGCTGCAATGGTTCAACTGgaatgttgtttttctttctttaaaaaaaatcatacatatcTTTTTAACGTAATGTGTAACAGGTTGAATTTACACTTACATTTGTGcccttaatttttttgtaatttttttcttgtcATAGATGGCAGACAGTATTTTGCTATAGCTCCTTTGTTAGATCATATGTGCTTTCTAAAAGCATTTGCATTGCCTTTGGAATTATTCaagtttgccttttttttttttttttttgaaagagcTTCTGAACATAGCAGCTCTGCAAAGCCATAACTGcctattttttaatcttttgtatatttttcctGCAAGAAGAACAATGTTTTACCTAGACAGAGGCTTAGAATAAAGTAGTGTAGAGAGTTTTACATAGAATGTAGACTTTTTTGTAGATGCAGGAATCCATCTCCGTCGGACTCTCAGGAAAATGATGCTGATCTGCGTTGAAGAGCCATTGTTCGGTCCACTCAAGCTCGATGGAGACGCCAGCTGTTTTGCTTCAGTTGGGTTAAGGTCCCCCACCCCTTGCCTCGTTCTCCTCAGTCAGTGTTTACAGACTGTTTTGTGTTGTTAGGGTGTTTTACTGTGACTGTGCCAGACATAGCTGTGAGTGTGTTATACTTGCTTTGTACCATTGAGTAGGATTCAAAGCCATTTTAAAGCCATTTTGCAGTTTGATAATTGATGCCGAGATACCGCAATTCTGATTCCTTCACTCTTCAAAGAATAGTTTGGCAGAAAATCACATTTCTACAGTTTCCCACATACTCCAAATGTAGTCTATCAGCCAAGACTGTGTGCTTCTCTCATTTTGCACTGTAGCTACAAGAGTAATGATTCTGTCAAGCCATACAAGTGGTTGCAAATTACAGGAATAATTGTGTTTGGCCTAATTCAGTACATTTTTATTGATAACAGAATGTTAAAAAGTGTTGGAGAAAGTGTCTCTTAGAGAAAGTTTCTATAATTTAACTTATTTCTATAATCCAATAATGCAGGGTAGTCTTAACCACATCACATTTAAGTTTAAGTTATGTTAGAAATACCAAATCCTTTAAACAGAAACATTAAGcattattcactattattcattCAAATTATAAATGtagcatttatgttttttatgagCCAGTCTTAATTACGATAACACttcattttgat

Function

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49365 lncRNA downstream 3512 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 25294 15515982 ~ 15527297 (-) False LOC111192377
TU49355 lncRNA downstream 25372 15514858 ~ 15527219 (-) False LOC111192377
XR_002649881.1 lncRNA downstream 25491 15515982 ~ 15527100 (-) False LOC111192377
TU49356 lncRNA downstream 26117 15514858 ~ 15526474 (-) True LOC111192377
TU49375 lncRNA upstream 42174 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA upstream 107866 15673783 ~ 15679306 (-) True G36664
TU49403 lncRNA upstream 181483 15747400 ~ 15761183 (-) True G36677
TU49413 lncRNA upstream 189696 15755613 ~ 15761608 (-) False G36677
TU49416 lncRNA upstream 189696 15755613 ~ 15761608 (-) False G36677
XM_007255143.3 mRNA downstream 5021 15541100 ~ 15547570 (-) True psmc5
XM_022669170.1 mRNA downstream 437479 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA downstream 441501 15094604 ~ 15111090 (-) False LOC103031644
XM_022669169.1 mRNA downstream 467569 15040534 ~ 15085022 (-) True med24
XM_022669166.1 mRNA downstream 690808 14834452 ~ 14861783 (-) True c4h16orf62
XM_007255140.3 mRNA upstream 6863 15572780 ~ 15580758 (-) True LOC103026640
XM_022669179.1 mRNA upstream 16708 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA upstream 16708 15582625 ~ 15607667 (-) False LOC103026344
XM_007255138.3 mRNA upstream 157342 15723259 ~ 15737075 (-) True LOC103025516
XM_022669182.1 mRNA upstream 180367 15746284 ~ 15769469 (-) True LOC103024156
trnal-caa_19 other downstream 595834 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 596241 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 596647 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 597053 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 597254 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 189696 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 189696 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 189696 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 192473 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 271188 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile