RNA id: trnal-caa_18


Basic Information

Item Value
RNA id trnal-caa_18
length 84
RNA type tRNA
GC content 0.56
exon number 2
gene id trnal-caa_18
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 14956238 ~ 14956350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACaatggccgagcggtctaaggcgccagactcaagttctggtctccgaatggaggcgtgggttcaaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49087 lncRNA downstream 79160 14832969 ~ 14877078 (-) True G36477
TU49046 lncRNA downstream 169485 14786037 ~ 14786753 (-) False c4h10orf88
TU49028 lncRNA downstream 177843 14749553 ~ 14778395 (-) False G36428
TU49027 lncRNA downstream 177843 14774681 ~ 14778395 (-) True G36428
TU49012 lncRNA downstream 251007 14704543 ~ 14705231 (-) True G36417
TU49167 lncRNA upstream 192053 15148403 ~ 15149356 (-) True G36542
TU49176 lncRNA upstream 243472 15199822 ~ 15200037 (-) True G36550
TU49335 lncRNA upstream 426162 15382512 ~ 15454810 (-) True G36632
TU49314 lncRNA upstream 436661 15393011 ~ 15397037 (-) True G36629
TU49337 lncRNA upstream 451110 15407460 ~ 15412008 (-) True G36634
XM_022669166.1 mRNA downstream 94455 14834452 ~ 14861783 (-) True c4h16orf62
XM_007260030.3 mRNA downstream 159026 14785952 ~ 14797212 (-) True c4h10orf88
XM_022669155.1 mRNA downstream 339616 14565938 ~ 14616622 (-) False wapl
XM_022669169.1 mRNA upstream 84184 15040534 ~ 15085022 (-) True med24
XM_022669170.1 mRNA upstream 138254 15094604 ~ 15115112 (-) True LOC103031644
XM_022669171.1 mRNA upstream 138254 15094604 ~ 15111090 (-) False LOC103031644
XM_007255143.3 mRNA upstream 584750 15541100 ~ 15547570 (-) True psmc5
XM_022669178.1 mRNA upstream 596241 15552591 ~ 15565917 (-) True smarcd2
trnal-caa_17 other downstream 294 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 700 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 901 14955227 ~ 14955337 (-) True trnal-cag_9
trnal-caa_15 other downstream 1103 14955023 ~ 14955135 (-) True trnal-caa_15
trnal-caa_14 other downstream 1304 14954820 ~ 14954934 (-) True trnal-caa_14
trnal-caa_19 other upstream 295 14956645 ~ 14956757 (-) True trnal-caa_19
TU49397 other upstream 799263 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 799263 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 799263 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 802040 15758390 ~ 15758863 (-) True LOC111192378

Expression Profile