G36542


Basic Information

Item Value
gene id G36542
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15148403 ~ 15149356 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49167
TTGGGTGGTTTTGTCAGTAATTTTGTGgatttgaaacacgttttaccctgtaaattggttttatctgaatcccactgtaacaatctggcaaccctggtggctcgctgtccgctccgtttcttcggctgtctgttgcttagttGCGAGACCCGCAaagcattttgggacacattcagCTCGCTTAGTAAGCAGTGAAGtttactataaatcatgatgcattatgggagtttttagtgccctcaaaatcacgttcGAATCCCTCCTTATGATTCGGACACT

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49167 True 279 lncRNA 0.44 2 15148403 15149356

Neighbor

gene id symbol gene type direction distance location
LOC103031644 LOC108424598 coding downstream 33291 15094604 ~ 15115112 (-)
med24 med24,LOC107660474,LOC107678252 coding downstream 63381 15040534 ~ 15085022 (-)
trnal-caa_19 NA coding downstream 191646 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 192053 14956238 ~ 14956350 (-)
trnal-caa_17 NA coding downstream 192459 14955832 ~ 14955944 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding upstream 391744 15541100 ~ 15547570 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding upstream 403235 15552591 ~ 15565917 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 423424 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 433269 15582625 ~ 15611422 (-)
LOC103025516 NA coding upstream 573903 15723259 ~ 15737075 (-)
G36477 NA non-coding downstream 271325 14832969 ~ 14877078 (-)
G36428 NA non-coding downstream 370008 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 443172 14704543 ~ 14705231 (-)
G36396 NA non-coding downstream 578417 14552745 ~ 14569986 (-)
G36339 NA non-coding downstream 1117462 13984417 ~ 14030941 (-)
G36550 NA non-coding upstream 50466 15199822 ~ 15200037 (-)
G36632 NA non-coding upstream 233156 15382512 ~ 15454810 (-)
G36629 ki67 non-coding upstream 243655 15393011 ~ 15397037 (-)
G36634 NA non-coding upstream 258104 15407460 ~ 15412008 (-)
LOC111192377 NA non-coding upstream 365502 15514858 ~ 15527297 (-)
c4h10orf88 LOC103041415 other downstream 351191 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1648226 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 1836878 13307088 ~ 13311525 (-)
G36074 NA other downstream 2436858 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3075976 12067533 ~ 12072427 (-)
G36677 NA other upstream 598044 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 687749 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1764214 16913570 ~ 16915285 (-)
G37183 NA other upstream 1866772 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1898251 17047607 ~ 17062947 (-)

Expression


Co-expression Network