G36632


Basic Information

Item Value
gene id G36632
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15382512 ~ 15454810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU49335
aaagaacaagaaaaaaaaaaaaaaaactaaaacaaaacagaagaaaaattcacactggatTCTCAGAGTCTGTATGCTGTTTGTCCTCTTAgtcctttcacacacacacacacacacacacacttctcctcTTTGCAGGTCTTTGCACTCTTGGGGTTCTTGGACCCCTAGAATTGCCATTTTGTCCTCACACCCACACTTTCCCTCTTGCTCCTGCTTCCGTCCAGCGATGCCGGGCACTCCTCCCTCCGTCCACTGGATAAGCCTTTCAGCCTTCCATCTCTCACGTGAGCAGACAGAGAAGAGGGAGAAACTGAgagggatagaaagagagagatgaaggacATGGCGCCGGCCAGGAGGAGGACAGAGGGAGAGCAGGAGGGAggaaatgggggaaaaaaaaaagctccactCCGGTCTGGCTCAGGCCAGTCAGCATGTGTGGGGTGTGTTTGAGGGGACACAGTAGTCGGTAGGCGGTTGTTGCCGCGGCGACAGCGTTGGTCAGGGCGAGTGTGTCGGTGGGCTGCTTTGGGCGGAGCTCGGGGAGAGGGAGGGACTGCAGCTGCCAGGCGGAGCTCCGGCGGGACGAGACGAGGCTCCACTGCCTGAGGTCTCCAGACCCTCGGAATTCTCCAGCATCTCCTGGATCAGAGGCGGCATGGAGCCAGGAATTTCCATCTTCAGAGTGATCACACGCTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49335 True 707 lncRNA 0.55 2 15382512 15454810

Neighbor

gene id symbol gene type direction distance location
LOC103031644 LOC108424598 coding downstream 267400 15094604 ~ 15115112 (-)
med24 med24,LOC107660474,LOC107678252 coding downstream 297490 15040534 ~ 15085022 (-)
trnal-caa_19 NA coding downstream 425755 14956645 ~ 14956757 (-)
trnal-caa_18 NA coding downstream 426162 14956238 ~ 14956350 (-)
trnal-caa_17 NA coding downstream 426568 14955832 ~ 14955944 (-)
psmc5 psmc5,LOC107745657,LOC107753303 coding upstream 86290 15541100 ~ 15547570 (-)
smarcd2 smarcd2,LOC107569192,LOC107684754 coding upstream 97781 15552591 ~ 15565917 (-)
LOC103026640 si:dkeyp-118b1.2,LOC103026640,LOC108410802,LOC107694074,LOC107745658,LOC108273584,LOC105909120,LOC107684755 coding upstream 117970 15572780 ~ 15580758 (-)
LOC103026344 LOC108410807,LOC106579091,LOC107569191,LOC105909101,LOC105006181 coding upstream 127815 15582625 ~ 15611422 (-)
LOC103025516 NA coding upstream 268449 15723259 ~ 15737075 (-)
G36550 NA non-coding downstream 182475 15199822 ~ 15200037 (-)
G36542 NA non-coding downstream 233156 15148403 ~ 15149356 (-)
G36477 NA non-coding downstream 505434 14832969 ~ 14877078 (-)
G36428 NA non-coding downstream 604117 14749553 ~ 14778395 (-)
G36417 NA non-coding downstream 677281 14704543 ~ 14705231 (-)
LOC111192377 NA non-coding upstream 60048 15514858 ~ 15527297 (-)
G36657 NA non-coding upstream 94069 15548879 ~ 15549079 (-)
G36664 NA non-coding upstream 153281 15608091 ~ 15679306 (-)
G36678 NA non-coding upstream 300946 15755756 ~ 15760772 (-)
LOC111192406 NA non-coding upstream 336287 15791097 ~ 15795369 (-)
c4h10orf88 LOC103041415 other downstream 585300 14785952 ~ 14797212 (-)
p4ha1 p4ha1,p4ha1a,LOC107753313,LOC108273903,LOC107560551,LOC107684765 other downstream 1882335 13475166 ~ 13500177 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 2070987 13307088 ~ 13311525 (-)
G36074 NA other downstream 2670967 12709808 ~ 12711545 (-)
LOC103036331 NA other downstream 3310085 12067533 ~ 12072427 (-)
G36677 NA other upstream 292590 15747400 ~ 15774593 (-)
LOC103023526 ndua4,ndufa4,LOC103023526,LOC108443163,LOC107745684,LOC107684782,LOC107569184 other upstream 382295 15837105 ~ 15840516 (-)
LOC103043629 LOC108412394 other upstream 1458760 16913570 ~ 16915285 (-)
G37183 NA other upstream 1561318 17016128 ~ 17018918 (-)
crym rac1,RAC1,rac1a,crym,LOC105898786,LOC108412270,LOC108437155,LOC107569188 other upstream 1592797 17047607 ~ 17062947 (-)

Expression


Co-expression Network