RNA id: XM_007255139.3


Basic Information

Item Value
RNA id XM_007255139.3
length 3557
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC103026344
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15582625 ~ 15611422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAAGTCCTCTGAGCTTCTTTGCGAGCTGGGGGTTCAGGGTTGGGTCTCCTGCACTGGACAGCGTTCGCTTCCGCTGCTCTGAACGTGAACACCAACGCCAGCACCACAGCAGACTGTCAGGCCTATGCCGAGCTCATGAAGGAACAGAACCAGCAGGGCTACTGGCAGGAGACGGGGCGATGGGTAGGCTACGAGGAGAATTACGACCTGGAGGCCAGGCACTGGGGGCCGTCCCACATATCCTACCTCACCTTCAAGAGCCTAGTGCAGCTCCGAAGGACCATGAACACTGGGGTGGTGATGCTGGACAGGGAGGAGCGCTCGTTCTCCAGTATTGCTGAGAAGATTGTGGATGAGATGGTCAGTAAGAAGGAGATTCAGTCGGGTGACCGGGAAGGGGTGCTTCGAGCCCTAATGCAGAACTGCAGCCAGTCAGCAGAGACCCAGACACTGACCTCACCACTGGAAATGCAGACGGTTGCAGAGAAGAGAGATGCATCTAATAGAGTAGAGGCCTCCATGGTGCTTGTAGGTGCACTGGACTTTCTGGAGAAGCCAACAGTAGCATTTGTGCGTCTGAAGGAGGCGGTGGTCCTCGGGTCTGCACTGGAGACTCCAGTTCCTGTCCGCTTCCTCTTCGTGCTGGTGGGCCCTGCCAAGGGCGACATGGACTACCATGAGAGTGGCCGCGCCATGGCCGCCCTGCTGGCAGATAAAGTCTTTAACCAGGCAGCCTTTCAGGCTCAGAATGACAGAGAGCTGATCGATGCCATGGCCGACTTCATGGACTGCAGCATTGTGATCCCACCCACTGAGATCCAGAATGAGGCCATGCTTGCACCAATCATTGGTTTCCAGAAGAAGCTCCTGCAGGAAAGGCTCCGCCCTTCTGACCCTCAGCTGCGCATTGACATCAAGCCACGCAAACCCTCCATTGCAAGACCCCCTCCACCAGAAGATCCATTGGTGCGTACTGGTGTCCTGTTTGGAGGCATGGTCAGGGATTTCAAAAGACGGTACCAGCACTACAAAAGTGACATCACAGACGCCATGAACGCACAAGTTCTCGCTGCTGTCATCTTTATCTACTTTGCTGCCCTTTCTCCTGCCATCACTTTTGGAGGCCTGTTAGCTGACAAAGTGGACAATATGATTGGCGTGTCTGAGCTGATGCTGTCCACAGCAGTTCTTGGGGTCATCTTCTGTCTCGTGGCTGCCCAGCCGGTTCTCGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAGGCATTCTATGCGTTCTGTAAGTCCCAGGACATTGAGTACATCGTGGGGAgagtgtgggtgggtgtgtggctCATCATCATTGTGGTGGTGATTGTGGCAGTGGAAGGAAGCTTTTTGGTGCGCTTCATCTCCCGCTTCACTCAGGAGATCTTCTCCATCCTCATCTCCTTCATTTTCATCTACGAGACCTTCTCTAAACTCGGCAAGATTTTCAAGGCGCATCCTCTCATCCTCAACTATGATCACCTGAACAACACAGTGGAGGACCCATGGCACCCAGTCGCCAAAACCATTGTAGATAATTCAACAGGCAACGTGACCATTAGGACTGTCATCCACGAACGCGCCTATCCCAACACCGCCCTGCTCTCCATGTGTCTGATGTTCGGCTGCTTCGCCATCGCTTACTACCTGCGCATCTTCAAGAATGGCTACTTCCTGCCTGGCAAGCTCCGTCGCCTGATGGGCGATTTTGGCGTCCCCATCGCTATCTTCCTCATGGTCGCAGTGGACATCAACCTTGAGGACACCTACACCCAGAAACTGGTGGTGCCTAAGGGCCTGCAGGTGTCCAACCCTGCAATGCGGGGGTGGCTCATCAACCCCATGGGCGAACACAAGTCCTTCCCTGTCTGGATGATGTTCGCCTGTGTCGTGCCTGCAGTACTGGTCTTTATCCTCATCTTCCTGGAGTCGCAAATCACCACGCTAATAGTTAGTAAACCAGAGAGGAAAATGGCAAAAGGGTCTGGCTTCCATTTTGACCTTCTGATTTTGGTCAGCTTGGGGGGATGTGCTGCATTATTTGGGATGCCTTGGCTCAGCGCGGCTACGGTCCGGTCGGTAACTCATGCCAATGCACTGACTGTGATGAGCAAAGGGCCCAAGCCGGAGATTGAGAAAGTTCTGGAGCAGAGGGTCAGTGGCGTGTTGGTCGCCCTGTTAGTAGGCCTCTCCATCCTCATGGAACCTATCCTAAAGATGATTCCCATGGCAGCTCTGTTTGGAATCTTCCTCTACATGGGGATCACATCTCTCAGCGGGATTCAGCTGTGGGATCGCTTTCTGCTCCTCCTAGTTCCCAAAAAGTACCATCCCAATGAACCATACGCtacaaaaGTAAAGACGAACAGGATGCACTTGTACACAGCCATTCAGCTGGTGTGCCTGGCCGTCTTGTGGATTGTGAAGTCCAGTCCTTTCTCCCTGGCCCTGCccttcatcctcatcctcaccaTCCCTCTGCGCATGGTCATGACTGGCCGCATCTTCACTGAATTTGAGATGAAATGCCTGGATGCTGATGATGCCAAAGTGACATTTGAGGAAGAACCTGGAGTGGATATGTACTCAGAGACACGGATGCCTTCGTAGACGTGTTAAACCGAAGTCTTCCATCCTGCACTGACTTGATATAAATTTTTGATGGTTGATATATACGatatttattgaatattttagATCATCTCTTATAGTATTTTGTCACCATCTGCCTTCCAttctttatgtatttaatgtgcAATTGcttttacttaaattatatttgcaTAACTATTTTCAGAAGTCAAACACTGGACAAAATGTATCTTCAGTGAGTTTATTCTGCAAGGTTGTGTACAATGTGTATCCACAGGTCACCTGATACACATTTTAATCCAGTTACTTCCATAAGCACATGCTGTAGCTGGTGTAGTTGAGTAGGTAATAACTTGACGCTTCCTGTGGTAGACTAGGGTTTGATTCTCTGGTTGGCTAAGCACACCAAAGTTCACAAATAAGAGTGCCTGCACAAAGCTTCTGAAGGCTCAATTATACTCATTTCACATACAGAAATGAATACGTAGTACATAATACTGTCACTGCCCACATGCTTCTATGCATTCTTTATGTTGGCAGCTCAAAAAAgtcaacaaaaaacattttaataataacaaaaaaaacaaataataatccgtacataataaaaaaataatccgtACATATCATTGAGCATAAATGAGCCTTAACTCTACATTCCTCCCCCTGTGTAACTTGATTTAAATGTAAGCTGCTGTGGAGAAAGTGCCAaccaaatgctgtaaatgtggATTTACCGATTCATAGAAAAGCTCTAGAAAAACAGCCAAGATATATTAATGTTCTGAAGTCTTATGTCACTCTGACAGTTAAATTTTGCTTTTGAGTGTTACTctctatatgtatatgtgtcaTATAGCCTTGCAGTGCCTTGTAATGTTCACAGCACTTTCGTACACTGCATTATTAAACAATGTTGAAGTTATTTAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015698 inorganic anion transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49365 lncRNA downstream 33546 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 55328 15515982 ~ 15527297 (-) False LOC111192377
TU49355 lncRNA downstream 55406 15514858 ~ 15527219 (-) False LOC111192377
TU49375 lncRNA upstream 424 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA upstream 66116 15673783 ~ 15679306 (-) True G36664
TU49403 lncRNA upstream 139733 15747400 ~ 15761183 (-) True G36677
TU49413 lncRNA upstream 147946 15755613 ~ 15761608 (-) False G36677
TU49416 lncRNA upstream 147946 15755613 ~ 15761608 (-) False G36677
XM_007255140.3 mRNA downstream 1867 15572780 ~ 15580758 (-) True LOC103026640
XM_022669178.1 mRNA downstream 16708 15552591 ~ 15565917 (-) True smarcd2
XM_007255143.3 mRNA downstream 35055 15541100 ~ 15547570 (-) True psmc5
XM_022669170.1 mRNA downstream 467513 15094604 ~ 15115112 (-) True LOC103031644
XM_007255138.3 mRNA upstream 115592 15723259 ~ 15737075 (-) True LOC103025516
XM_022669182.1 mRNA upstream 138617 15746284 ~ 15769469 (-) True LOC103024156
XM_022669183.1 mRNA upstream 138617 15746284 ~ 15769468 (-) False LOC103024156
XM_022669184.1 mRNA upstream 138618 15746285 ~ 15769468 (-) False LOC103024156
XM_022669435.1 mRNA upstream 165291 15772958 ~ 15778847 (-) True LOC103033657
trnal-caa_19 other downstream 625868 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 626275 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 626681 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 627087 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 627288 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 147946 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 147946 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 147946 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 150723 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 229438 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile