RNA id: XM_022669184.1


Basic Information

Item Value
RNA id XM_022669184.1
length 2890
RNA type mRNA
GC content 0.41
exon number 17
gene id LOC103024156
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15746284 ~ 15769469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTTCTGATATATATAAGCATAATCACTAACACTTTTTTCATCTTTGCAGGCAGGGAACTGCACTAGACACAAAACTGGTGGCTTGCAACCTGGTTTGATTCTCAGGATGGGGTATCCACCTTCACTGTGTTTGGCTGCCCTGCTCTTCCTGAACATAGTCACCACAAATGGACTCCCCGCAACCACAGTTCAAACCACAAATTTGATGGGTACCACCACTGGAAACCGCACAACCACAGTTCAATCCACAGGGTTAACAGGCACCACACCTGGAAGCCCCACAACCACAGTTCCATCCACAGTTTTTACAGGCCCCACAACTGGACGACCCACAACTACAGTTCAATCCACAGGTTTAACAAGCCCCACAACTGGGCGACCCACAACTACAGTTCAATCCACAGGTTTGACAAGCACCACAACTGGACGCCCCACAACCACAGTTCAAACCACAGGTTTGACGaGCACCACAACTGGACGCCCCACAACTACAGTTCAATCCACAGGTTTGACAAGCCCGACAACTGGAAGCCCCACAACCACAGTTCAATCCACAGTTTTTACAGACACCACAACTGGACGCCCCACAACTACAGATCAATCTACAGTTTTTACAGCCTGTTCAGCTTTGAACTGCACTGCCAGAGAAGAGTGCAAGGCGAGAAGTGGAATTTATGGCTGTGCCTGTGCGAACAACAATCCAAGATTTAATGCTGCcacttttgATGCCTACAACTACTGTAACAGCAGTTCTGGGGTGCTGTCACTCTCTCGCTGTGAGCTCTTCGAGGCTGGATTTCCTTCAGACTTCCTTCACCTCAATGATCCTAGTTGTGGAGGGGATATCCAAGATGACAGAGTGGTGTTCACTTTCGACAACAGGTTTAGGATCTGTGGCACAACAATGAAGAGTAACGCAACACACTTAATCTACGAGAACACTGTTCGGATGGCAGAAGGTGTTTATTCAGGTAGTGTGATCAGTCGTGACAGCTGGCTGGACGTGAAATTCTCCTGTGTGTATCCACTCATCCAGAGCATCTCTATGTCCATGTCTATTTACTCCAAGGAAAGtgttgtgtCCAAAATACTGCCAGGTACTGAGAGCGCATATCAGCTCCGTCTAGTGACCTACCCCAATTCTTCATTCATTACTCCCTATTCCGGAAATATTACGATTGAAGTGAACCAGCAGGTCTTCATAGCTGTGGAGGCTGATGGAATTGACAGTTCACAGTTTGCTACTGTGCTGGACAGCTGCTGGGCCACTCCCTACAACAACATCAACTATCCTGTTCGCTGGGATCTGATCATTAATGAGTGTCCCAACGAGAAAGATGGCACAGTGGAGGTGCTGCAGAATGGAATCTGGACAGCCAGTCACTTCTCTTTCAGGATGTTCACCTTCACTAACCTATCTAACAGAATCTTCCTGCACTGTCAGGTGCACCTGTGCCCGCGGATGAGTGGTCAGTGCTCTCAGccatgtaataaaaatgatgacgATGATCAATTCAGAGGAAGACGTCGCAGATCTGTGGACTTCCACGACAAAGCTTCTATCAGCATGAGCTTCTAACTCTCTGGCCCTTTGAAACCTCTGTTTGTGTAACATGGCCTAGACTGTTTATTCTGTATGTAATTAAAGTGCTGTATTTACTAATGAACACaactatacaatatttttcatgATTAAGCTACAGGTGCAGATTAGTTTTTACAGATTAGGCgaacaatgaaaaacatttagattgattattgattatattttcacttattttcttctttagtaaaaataaatcttcTTAAGCACTTTATTTCACAGATTCAGTTTTCTTTACtgtattatcttattattattttatgttatactGAAGTTTGCCTTTTGGGTGCTTCTGTTTGCataatttttaatgttattactTTTTACTCAGAATTATTAGCTCTACTGTAACAGCACAGCAAAAAATTGGTTGTGCAGCAGATTGGGTGGAACGGTAGATAAAAAACTATAATTGTGTGCAGATTATTTGGACTGTGGATTATAAATGATGACCCTGCTTTAAAGGAGTATATGCTAGTGATCAAccgatatgtttttttttctctactctttttttttaaagcaattttttgttttgatacATAGGAATCACAAAAgtagagaaaacaaaacaaaaggcaaagaaaagaaagaacttcAAAGTACAATCACAAATATgcacacacaaaaagaaaagaaaacctgCACAGTGGGGTGACGGTTCCCATAATTATAAGTCTTTTGCATTAGAGTTCTTGTAGAATGTCCATTTCTGCCAGCTCTGCTCAGCCGCATTTTTTTGGATACGCAGAAGGAATGTAATTTTTTCCATGTTATATATCTCTTCCATTATTTCCatccattgttttatttttggtgaCTCTTTTTTCAACCAGTTCTTTGTAATAACTTTCTTTACTGccataatcattattttaaagatataaaCATCCGCTTTTTCAATCGATCCTTCCGGAATCAGGCCAAGATATAAAATCCTTGGATCTCTCGGAACTTCATATTGGAGGACTTCCTCTATTATTTCTAATACTTCCGACCAGAGTGGTTGTAATTTCACACATGACCAAAAAACATGCAGGTGATTGGGATTGATATGGCCACATTCTCTCCAACAAATCTGGTTTCCGATATGGGTTTTTTGATGGCCGATGCCGATATTTAGACAAAAGTAGTGGCCGATACAAAGCCGAtaatcccattttttttttctgatatctTTGTAAGTGTTTGAAgtttgttcattttgtgttcTTAGTGTTATTCTAGTTATTCAATTTCTTGTTTGTGTAGTCAAGCttagttttggttttagttttcttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49375 lncRNA downstream 66979 15608091 ~ 15679306 (-) False G36664
TU49374 lncRNA downstream 66979 15673783 ~ 15679306 (-) True G36664
TU49365 lncRNA downstream 197206 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 218988 15515982 ~ 15527297 (-) False LOC111192377
TU49392 lncRNA upstream 3425 15772893 ~ 15774593 (-) False G36677
XR_002649904.1 lncRNA upstream 21629 15791097 ~ 15795369 (-) True LOC111192406
TU49420 lncRNA upstream 31562 15801030 ~ 15801264 (-) True G36681
TU49434 lncRNA upstream 49848 15819316 ~ 15835494 (-) True LOC111192407
XR_002649905.1 lncRNA upstream 49946 15819414 ~ 15835522 (-) False LOC111192407
XM_007255138.3 mRNA downstream 9210 15723259 ~ 15737075 (-) True LOC103025516
XM_022669179.1 mRNA downstream 134863 15582625 ~ 15611422 (-) True LOC103026344
XM_007255139.3 mRNA downstream 138618 15582625 ~ 15607667 (-) False LOC103026344
XM_007255140.3 mRNA downstream 165527 15572780 ~ 15580758 (-) True LOC103026640
XM_022669178.1 mRNA downstream 180368 15552591 ~ 15565917 (-) True smarcd2
XM_022669435.1 mRNA upstream 3490 15772958 ~ 15778847 (-) True LOC103033657
XM_007255130.3 mRNA upstream 67637 15837105 ~ 15840516 (-) True LOC103023526
XM_022669186.1 mRNA upstream 71925 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA upstream 71925 15841393 ~ 15851677 (-) True LOC103023209
XM_022669187.1 mRNA upstream 104891 15874359 ~ 16026122 (-) True ank3
trnal-caa_19 other downstream 789528 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 789935 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 790341 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 790747 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 790948 14955227 ~ 14955337 (-) True trnal-cag_9
TU49443 other upstream 67637 15837105 ~ 15840485 (-) False LOC103023526
TU50113 other upstream 1246660 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 1325777 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 1409910 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1604716 17374184 ~ 17381597 (-) True LOC103024241

Expression Profile