RNA id: XM_007255130.3


Basic Information

Item Value
RNA id XM_007255130.3
length 876
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103023526
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15837105 ~ 15840516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAAAGCGGGGCGGGGCTACGGCtgcgttttttttctctccttcgcTTCGGTCATCACTGAGCATCGGAACGTGTGGTCGAGCGGCTAGTAAAGatcttttattctgtaataaaaataaaaataatagttatccaatatttttagctttatttaagcCGAAGATGTTGAACCTCGTGGCCAAGCAGCTCAGAAGCCACCCGGCGCTGATCCCTCTGTTTGTGTTCATTGGTGGTGGAGCGACCATGTCTATGATGTATCTTGGTCGCCTGGCTCTGAAGAACCCAGAATGCTCATGGGATCGCACCAATAACCCAGAGCCCTGGAACAAGGTGGGCCCCAATGACCAGTACAAGCTCTTCTCAGTCAACATGGATTACTCCAAACTGAAGAAGGACAGGCCAGATTTCTAAATCATTCCAGAAATGGATTAATTGTGAACTCTACACTTCAGAAGCAAATCCGCACAAACAACAGAGCATACCGTGGCACCTGTACCACCCTAAAGTCATCATTTcagagagagaatggagaaCACATTCTTGTTGCCTTCATTTACGTTTGTGTGCGCAAACACACATTTATGTACTGTATCTCAAACCTAAACAGTATTTATTGCCATTTGAGACCAGGGATTAAAAACGGTACAACAGGAGCCAAACATGCAGGTTGTCTTCAGAAACATCAGGAGAAGCAGTTTACCAGTTCTAGTCCCTGGTCACAATTGCATACctcatattaacatatttatatcaGTTTTGTTTGTGATTGTCTGCACTCATTACACCATGCAAGAACGGTCTACTTTGCTTTGTGCCAAACTTTAACTTGAAACTAATTtatcttataaataaatataaaatatgtattgacTTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K03948 NDUFA4; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649905.1 lncRNA downstream 1583 15819414 ~ 15835522 (-) False LOC111192407
TU49434 lncRNA downstream 1611 15819316 ~ 15835494 (-) True LOC111192407
TU49420 lncRNA downstream 35841 15801030 ~ 15801264 (-) True G36681
XR_002649904.1 lncRNA downstream 41736 15791097 ~ 15795369 (-) True LOC111192406
TU49392 lncRNA downstream 62512 15772893 ~ 15774593 (-) False G36677
TU49542 lncRNA upstream 22766 15863282 ~ 15864264 (-) True G36754
TU49543 lncRNA upstream 109259 15949775 ~ 15950699 (-) True G36755
TU49553 lncRNA upstream 216949 16057465 ~ 16058635 (-) True G36765
TU49595 lncRNA upstream 373284 16213800 ~ 16214829 (-) True G36800
TU49602 lncRNA upstream 402561 16243077 ~ 16243333 (-) True G36805
XM_022669435.1 mRNA downstream 58258 15772958 ~ 15778847 (-) True LOC103033657
XM_022669182.1 mRNA downstream 67636 15746284 ~ 15769469 (-) True LOC103024156
XM_022669183.1 mRNA downstream 67637 15746284 ~ 15769468 (-) False LOC103024156
XM_022669184.1 mRNA downstream 67637 15746285 ~ 15769468 (-) False LOC103024156
XM_007255138.3 mRNA downstream 100030 15723259 ~ 15737075 (-) True LOC103025516
XM_022669186.1 mRNA upstream 877 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA upstream 877 15841393 ~ 15851677 (-) True LOC103023209
XM_022669187.1 mRNA upstream 33843 15874359 ~ 16026122 (-) True ank3
XM_007255123.3 mRNA upstream 355897 16196413 ~ 16208914 (-) True LOC103021447
XM_015607335.2 mRNA upstream 622812 16463328 ~ 16484145 (-) False egr2
TU49397 other downstream 67576 15755613 ~ 15769529 (-) False G36677
TU49415 other downstream 67576 15755613 ~ 15769529 (-) False G36677
TU49409 other downstream 67614 15755613 ~ 15769491 (-) False G36677
XR_002649883.1 other downstream 78242 15758390 ~ 15758863 (-) True LOC111192378
trnal-caa_19 other downstream 880348 14956645 ~ 14956757 (-) True trnal-caa_19
TU50113 other upstream 1175612 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 1254729 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 1338862 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1533668 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 1592456 17432972 ~ 17466024 (-) True G37290

Expression Profile