RNA id: TU49542


Basic Information

Item Value
RNA id TU49542
length 983
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G36754
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15863282 ~ 15864264 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttatgcacaaccaaatagaattttttcctaagtttggtatccaattactccaaaatgatacagtaatatcctttGTTACTCACGTCACTAATAGTAtgtaatgtgttcttcaagagtGTCTTAGTcacattggataacaatttgatttgctggttttataggactctgaaatgtggtttatgcacaactgaatagacattttttccaagtttggtatccaattactccaaaatgatacagtaaaatcacttgatactcatgtcatgcatagtatggaatgtcttctttaaggctgtctcggtggcattggataacaatttgacttgctggttttataggactctgaaatctggtttgtgcaaaagtgaattaacatttttcgtatgtttgatatttaattactccaaaatggtacagtaaaatcacttgatacatatgttattaatagtatagaatgtgttttccaagcctttgttagtgccattggataacaatttgatttgctggttttctaggactcagaaatctggtttatgcacaatcgaataaacattttttctaagtttggtattcaattactccaaaatgataaagtaatatcacttgatactcatgtcaataatagtatagaatgtggtTTTCAAGACGTTATTAGttgcattggataacaatttgatttgctggttttataggactccaaaatgtggtttatcacaactgaatagacatttttcctaagtttggtattctATTACtccaaaataatacagtaatatgacTTTtcactcatgtcattaatagtatgacatgtgttcttcaagacagtcttggtggcattggataacaatttgatttgctggttttgtaggactccgaaatcaggtttttgcacaaccgaatagacatttattcctaaatttggtatccaattaatccaaaatgatacagtaatatcctttgttactcacgtcattaatagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649905.1 lncRNA downstream 27760 15819414 ~ 15835522 (-) False LOC111192407
TU49434 lncRNA downstream 27788 15819316 ~ 15835494 (-) True LOC111192407
TU49420 lncRNA downstream 62018 15801030 ~ 15801264 (-) True G36681
XR_002649904.1 lncRNA downstream 67913 15791097 ~ 15795369 (-) True LOC111192406
TU49392 lncRNA downstream 88689 15772893 ~ 15774593 (-) False G36677
TU49543 lncRNA upstream 85511 15949775 ~ 15950699 (-) True G36755
TU49553 lncRNA upstream 193201 16057465 ~ 16058635 (-) True G36765
TU49595 lncRNA upstream 349536 16213800 ~ 16214829 (-) True G36800
TU49602 lncRNA upstream 378813 16243077 ~ 16243333 (-) True G36805
TU49603 lncRNA upstream 381815 16246079 ~ 16246530 (-) True G36806
XM_022669186.1 mRNA downstream 11605 15841393 ~ 15851677 (-) False LOC103023209
XM_007255129.3 mRNA downstream 11605 15841393 ~ 15851677 (-) True LOC103023209
XM_007255130.3 mRNA downstream 22766 15837105 ~ 15840516 (-) True LOC103023526
XM_022669435.1 mRNA downstream 84435 15772958 ~ 15778847 (-) True LOC103033657
XM_022669182.1 mRNA downstream 93813 15746284 ~ 15769469 (-) True LOC103024156
XM_022669187.1 mRNA upstream 10095 15874359 ~ 16026122 (-) True ank3
XM_007255123.3 mRNA upstream 332149 16196413 ~ 16208914 (-) True LOC103021447
XM_015607335.2 mRNA upstream 599064 16463328 ~ 16484145 (-) False egr2
XM_007255117.3 mRNA upstream 599064 16463328 ~ 16467148 (-) True egr2
XM_022669201.1 mRNA upstream 673917 16538181 ~ 16713489 (-) True jmjd1c
TU49443 other downstream 22797 15837105 ~ 15840485 (-) False LOC103023526
TU49397 other downstream 93753 15755613 ~ 15769529 (-) False G36677
TU49415 other downstream 93753 15755613 ~ 15769529 (-) False G36677
TU49409 other downstream 93791 15755613 ~ 15769491 (-) False G36677
XR_002649883.1 other downstream 104419 15758390 ~ 15758863 (-) True LOC111192378
TU50113 other upstream 1151864 17016128 ~ 17018918 (-) True G37183
trnal-uag_1 other upstream 1230981 17095245 ~ 17095326 (-) True trnal-uag_1
TU50180 other upstream 1315114 17179378 ~ 17184405 (-) False LOC103030148
TU50205 other upstream 1509920 17374184 ~ 17381597 (-) True LOC103024241
TU50265 other upstream 1568708 17432972 ~ 17466024 (-) True G37290

Expression Profile