RNA id: TU49375


Basic Information

Item Value
RNA id TU49375
length 3179
lncRNA type sense_over
GC content 0.36
exon number 4
gene id G36664
representative False

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 15608091 ~ 15679306 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CactttcatggttttaatagtttataattgCATCGAACCAGATTTAGGAATTCTAGCAAATTCACATTAATATGATACAGTGTACATATTAGTAAATACAAGGAACATtcacgtttttattttttcagtttgtaCATTGTACTTTCTTGAgatctttcttcttctcttccacctccagcctttttttttgacctgtccatctctccatcccttTTCAATCATGCTACTTCTCCTGAGTGCAAGATTCAACATTTCATTCCATTTCTTCAGCTCAACCCACCTGTCCTTTGTACCCTTTTTCATTTGTGTGGATACGTAACCTTTTGCATACAGGTTTTTTGAATGATTGTCAGAAAGCAGTGTGCCCTTTTGCAGACCTCTGTGTGGACACTAGGCCCTTGCGATATCCAacagtattaatgtattaagACATTCGAGAAAAActtgacaaaaacaaacaaaagcacaaaacaaatATTGGAAAAAGATGGCAAATTGTCCAAAGGTTGGGAGAGGACTGATTACAGCGTTCAGAACAGGAATGATCGTGGCCTAACACTGGCCAGTCTCACTTAGGAGTACATGCCAAAAcagtaacataaaaaaacaacagattattattaacaCAAGGTAAACAGAAAGAATAGAACAACATAGACCTGATATTTCTCTCAGGCACTTGTGATACTGaatacatatttacacatttaagtGCTACAATCTAATCTggtaaaaaaagataataaaaaataatattaaacatataactTCTTAATAAGAAAAATTACAACACCCCCCTCTGTAAAAAGGGAGGAACCCCTTCATTACAAACTAGACAGTGTTTGCATATCCCAGTATTACTGTCAAAGATCCTCTGTAAAACCTGGCTTTTTCCTAAGATGGCAGAATGCTACATCACATGATTGAATTTATATTGTACCATATGCTACACATCTACAGTATCTTTAAAGGGGAACTCCAGCCAAAAGtaattgtgtaaaatgaatACCTACTCACCCCATATAGTGGTGCTGTGGTGGTTTCtaacagttttttaaatgtaaagtagACATTTTTCCCCTGAAACGGCTAATTTCAAGTATATAGTACCAAGCCATTATCAACATGTGTGAGAATCACAGAAGCCATGGGAGAAGTGAGATATCTGGTTTAAACAAAAGATAAAACACTATAAAGAACATTATATAGTTCTGTTAGAAGTTAATGTTGCTTCTATTTCTTATCCTTTACATTGGTGCTGGGCAATTGTACTAAGAAATCTGTGATaaacaaaaagctaaaaatgatacaaaatcATAAAGTTAATGAGACTAAAAGCTACTCTACTAAAATCttgcaaaacatgcaaaaaaatctaCATAGCTAGTTTTAAGCTAGAATACTCATTAAACAAACGGCAGTGAACCCAATAGCACTGGCAGTTGAATATTTAAAAGATATATGTTAGAAACCAAGACTTAAAACATGAGTGAGGATAAGGATGTTAATATGTAGCTAACCATTGTGTGTTTGTCTAATGGTGACCCCAATGTTAGCTATGCACTAGTAAAAAAGAAAGTTAACTACTTGGAAATTCATCAGTTTCATCATTCAGAAATTATTCATCAGGTTGGTGTGAAATGCTCTGTTATAGAGTGTACAAAGTGAATGGAAAATCACATTTATGGTgacttaaatattgttttactattactatttttatgaTACATATTTAGCTTACAATGTTCTtctttaacaataaacagatgaaTGGTGAAGTTTATAGAATGGTAAAAATAGTCCTCAAAAAAAACTTGTCTTTTTCCTGATTTATCACTGGTGGTTTTGTGAGTAAATTGGTCATGTTTGCATTGCTTAaaccatttcacaccaaaccactGTGAAATATCATCTTAATATATAAACTTAGGTAaagaatttttgttttttgctcaaCTAGTGGTTCCTCAATCCGTAACTCTTAATAAAGCCTCAGTTGTATGGAGCATgaagatatactgtatattgtttcagcatcaACATTGCATTGTGCGCATGTGTAATAGTCACATAACAGgagcatcatttatttcacttcagtCTTTAACAACAAAGTGTCAgattttccctttatttttttcagtattatgcAGCCTCGTGTGTAATCTTTGGAGAGACAAGACACGTGACATTTGGAAATGCTGTGTGACATATATGACCCCTGAGAAAATACAGACCCCTGGATAATTCGTTTTCTTTTTCGTCCAGCCGCGCTTTGTACCTTCGTCATCTACGCTGTACCGCCATTAACCAGTCAAGAGTGGTTAATGCCACCCTTTCACAGGCCTTCACGGCCCACCAGCCCACCCTACCCCCACCTTTTATTCCAGACTGACAGAGAAAAATGGAGAGATGTATTCCATATTTTGCTTTTTGGCTGAATTCGACGGTGTCTTGTTTCTTACGCTCATTACAGCCTTCATTTAAGTCACTTTAGATTAACCTGAATTGCTTATATGGGACACCAGTTCACTTTAATCAGTTTGTAGTTGTGCTTGTTtcttgcaCTCTATCTAGGTCACGGACTCCATGACCAAGCTCTTTTGTCATGGTGATGACCCTGAGCAGGTAGTGACCAGTATCCTTTTACCTTCTTGTTAAAAAACAAGAAGGAAAAGAGATGCTTCTCAGTTTTCGGCTGGACCACCGGGACGGGAAAGCCTTGTAACATGCTTTCTGAGAAGGTTCCACCTCTCATAGGATCGGGAAGGATAAACCACCACCAAAATATAATGTTAAAGCCTCTCAGGCCAAAGCAGAAAATTTAACCATTGctgatatatacagctctagaaacaataagagaccacttaaaaattatgagcttctatgattttgccaaattaaaaacctctggaatataatcaagagaaggatggatgatcacaagtcatcaaaccaagctgaactgcttgaatctttgcaccagaagtagcattaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaaagctgtgcttaaaaacaggattattccactaaGTATTGATTTTTACGAACTTTGCGAacttcgcattatttgaggtctgaaagctctgcatcttatttcagccatttctcattttctgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49365 lncRNA downstream 59012 15548879 ~ 15549079 (-) True G36657
XR_002649882.1 lncRNA downstream 80794 15515982 ~ 15527297 (-) False LOC111192377
TU49355 lncRNA downstream 80872 15514858 ~ 15527219 (-) False LOC111192377
XR_002649881.1 lncRNA downstream 80991 15515982 ~ 15527100 (-) False LOC111192377
TU49356 lncRNA downstream 81617 15514858 ~ 15526474 (-) True LOC111192377
TU49403 lncRNA upstream 68094 15747400 ~ 15761183 (-) True G36677
TU49413 lncRNA upstream 76307 15755613 ~ 15761608 (-) False G36677
TU49416 lncRNA upstream 76307 15755613 ~ 15761608 (-) False G36677
TU49417 lncRNA upstream 76450 15755756 ~ 15760772 (-) True G36678
TU49392 lncRNA upstream 93587 15772893 ~ 15774593 (-) False G36677
XM_007255139.3 mRNA downstream 424 15582625 ~ 15607667 (-) False LOC103026344
XM_007255140.3 mRNA downstream 27333 15572780 ~ 15580758 (-) True LOC103026640
XM_022669178.1 mRNA downstream 42174 15552591 ~ 15565917 (-) True smarcd2
XM_007255143.3 mRNA downstream 60521 15541100 ~ 15547570 (-) True psmc5
XM_022669170.1 mRNA downstream 492979 15094604 ~ 15115112 (-) True LOC103031644
XM_007255138.3 mRNA upstream 43953 15723259 ~ 15737075 (-) True LOC103025516
XM_022669182.1 mRNA upstream 66978 15746284 ~ 15769469 (-) True LOC103024156
XM_022669183.1 mRNA upstream 66978 15746284 ~ 15769468 (-) False LOC103024156
XM_022669184.1 mRNA upstream 66979 15746285 ~ 15769468 (-) False LOC103024156
XM_022669435.1 mRNA upstream 93652 15772958 ~ 15778847 (-) True LOC103033657
trnal-caa_19 other downstream 651334 14956645 ~ 14956757 (-) True trnal-caa_19
trnal-caa_18 other downstream 651741 14956238 ~ 14956350 (-) True trnal-caa_18
trnal-caa_17 other downstream 652147 14955832 ~ 14955944 (-) True trnal-caa_17
trnal-caa_16 other downstream 652553 14955426 ~ 14955538 (-) True trnal-caa_16
trnal-cag_9 other downstream 652754 14955227 ~ 14955337 (-) True trnal-cag_9
TU49397 other upstream 76307 15755613 ~ 15769529 (-) False G36677
TU49409 other upstream 76307 15755613 ~ 15769491 (-) False G36677
TU49415 other upstream 76307 15755613 ~ 15769529 (-) False G36677
XR_002649883.1 other upstream 79084 15758390 ~ 15758863 (-) True LOC111192378
TU49443 other upstream 157799 15837105 ~ 15840485 (-) False LOC103023526

Expression Profile