RNA id: XM_039788470.1


Basic Information

Item Value
RNA id XM_039788470.1
length 1531
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120551219
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10176970 ~ 10210251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaaagcaaaagcaaaCACTCAGTATTACTCAGTGTTAAACTGAGCAGCAAAGCCTCCAGTTCTCAGTCTCAGGGATGGCAGTCCAAACCTCCAGCTGTTTTTCTTTGCTGCTTGTGATCTCAGTTTGTAttgtactttttcttttatcatgGGGCCAATCATCAAGCAGCATCAGCTGGATTACTTTCTCGACTCCGCCCCCTGTTGTGTTTACACATACAGCAAAAAAAGCTGattccacaaaaacaaatctaaaaacTGATCAGATGAGACGCTCTACACTTGGTGCTATGGTTGAGACTCCCATGCCCGTCCTCTCTAAAACCTCCTTCACGAAGCTTCCTCACTGGGATTTTGACGATGTATATAACCAGGATGTTCCACCCAGGCAGACAACATGTGCCCAGTCTCTGCGAAACTCTGAGGTTGAGAGCTTCAAGAAGGCTTTCCTCCCCAACATACGTTTGTTTCTGCACAAAGACAGTATCAACATGAGCGAGTGGAATCGGCTTTCACATTTTAACAATCCTTTTGGTTTTATGGAGTACAAGTATGATGAAGTGATGGCTTCAGTAAAGTTGATCCCAAAGCCAaaagagccactgctccttccAAAACCAGGCGATGATGGGTGTGTGCGCTGTGCTGTGGTGGGCAATGCAGGGATCCTCAATGGCTCTAAAATGGGACAAGAGATTGATACTCACGATTACGTTTTTCGGATGAATGCTGCAATCACCAAAGGTTACGAGGAAGACGTAGGAAACAGAACATCGGTGTACATTCACACGGCCCACTCCATCACATCTGCGCTGTATTTCTTCAAGAAGTTTGGATATACTACTGTCCCTCATGATGAAGGTATAAAATACGTGATGGTTCCTGAGGGGATGAGGGATTTCAATTGGCTCAAGGGTCTTCTCAAAGGAGAAAGAATCACTGCTGGCCCATATAAAAACAAGAGGCCATGGACGTACTATGCTGGGCAGTACAATGAGACCCGCTTCTATGTTCTGCACCAGGACTTCCTCAGATACATTCGAAACAGGTTCTTAAAGTCTCCTAATCTGAATGCTTCATACTGGGCAATAGTCAGACCAAGCAATGGGGCATTCACTCTCTTCCTGGCTCTGCATACCTGCGACACTGTGAATGCATATGGATTCATGACTGAGGACTACAAGAAATACTCAACTTACTACTTTGAGAAAAATATTAAAGCCCCTGTCATTCTCTACGCCAACCATGACTATATCCTGGAGAAAAACATGTGGAAAAAACTGCATGACAGCAAAATAattaagctttatcaaagaacAGAGTCAGAAACAGGGACGAAAAAGCCAAAACAACACTGATACTCTGAGAATGGAAGTAATGGCATCAAGAATGTAggtcattttgttttaaattcgtATTGTTTACTTCAGTAATTCCAGGTACTTTATATTACACTGCAGTTCAGAAGAAAATATTGCACCTTTTACCTCACTATCTTTTTACTTACTTATTGTGATTTATCATGcatg

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03479 SIAT7A, ST6GalNAc I; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286247 lncRNA downstream 13305 10163385 ~ 10163665 (-) True G211235
TU286241 lncRNA downstream 35274 10140593 ~ 10141696 (-) True G211229
TU286222 lncRNA downstream 86903 10084575 ~ 10090067 (-) True G211214
TU286237 lncRNA downstream 93154 10083547 ~ 10083816 (-) True G211225
XR_005637847.1 lncRNA downstream 94236 10081959 ~ 10082734 (-) True LOC120551239
XR_005637848.1 lncRNA upstream 281 10210532 ~ 10217704 (-) True LOC120551240
TU286539 lncRNA upstream 47891 10258142 ~ 10361903 (-) False G211440
TU286536 lncRNA upstream 140459 10350710 ~ 10361903 (-) False G211440
TU286537 lncRNA upstream 140459 10350710 ~ 10361903 (-) False G211440
TU286538 lncRNA upstream 140459 10350710 ~ 10361903 (-) True G211440
XM_039788487.1 mRNA downstream 4967 10169714 ~ 10172003 (-) False LOC120551227
XM_039788480.1 mRNA downstream 48944 10114391 ~ 10128026 (-) False LOC120551222
XM_039788479.1 mRNA downstream 49314 10114391 ~ 10127656 (-) True LOC120551222
XM_039788486.1 mRNA downstream 68641 10093895 ~ 10108329 (-) False LOC120551225
XM_039788485.1 mRNA downstream 68641 10093895 ~ 10108329 (-) False LOC120551225
XM_039788499.1 mRNA upstream 30171 10240422 ~ 10243479 (-) True arl3b
XM_039788500.1 mRNA upstream 90112 10300363 ~ 10322684 (-) True LOC120551235
XM_039788467.1 mRNA upstream 175126 10385377 ~ 10394268 (-) True LOC120551217
XM_039788461.1 mRNA upstream 199358 10409609 ~ 10415002 (-) True LOC120551210
XM_039788448.1 mRNA upstream 230610 10440861 ~ 10488302 (-) False LOC120551205
XR_005637844.1 other downstream 5785 10169714 ~ 10171185 (-) True LOC120551227
TU286058 other downstream 282557 9887314 ~ 9894413 (-) True G211113
TU285814 other downstream 1583906 8589241 ~ 8593064 (-) True G210928
TU285754 other downstream 1892239 8282960 ~ 8284731 (-) False LOC120551255
TU285591 other downstream 2114720 8059323 ~ 8062250 (-) True G210761
TU286556 other upstream 116416 10326667 ~ 10329408 (-) True G211451
unassigned_transcript_1163 other upstream 132266 10342517 ~ 10342598 (-) True trnal-uag_19
unassigned_transcript_1165 other upstream 646491 10856742 ~ 10856835 (-) True trnai-uau_4
XR_005637842.1 other upstream 654844 10865095 ~ 10891987 (-) False mta3
TU286738 other upstream 786069 10996320 ~ 10999853 (-) False nrxn1a

Expression Profile