arl3b (arl3,LOC103367836,LOC102778022,LOC102201386,LOC103145158)


Basic Information

Item Value
gene id arl3b
gene name arl3,LOC103367836,LOC102778022,LOC102201386,LOC103145158
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10240422 ~ 10243479 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788499.1
GAATCAGCAAATCAGAGGTAGAgtaaggcagagtagggcgggagaTATCGTAGCCATCCTTGCTTTTGGGGGTTGCGCCTACGTAACTGTGCGTCTGACGTCACCCTCCTTAGTAACCCTCGGCGGCGTCTCTAGTAGAGAAGGCATCAAGATGGGATTGCTGTCCATCCTACGTAAGCTAAAGAGCACACCAGACCAGGAGGTCAGgatactgctgctgggtctggACAACGGCGGGAAGACCACCTTACTCAAACAGCTGGCATCTGAGGATATCAGCCATATCACCCCCACACAGGGATTCAACATTAAGAGCGTCCAGTCTCAGGGGTTTAAACTGAATGTTTGGGACATTGGAGGCCAGAGGAAGATCAGACCGTACTGGAGAAACTACTTTGAAAACACAGATGTGCTGATATATGTCATTGACAGCGCTGACAGAAAGAGATTTGAGGAGACTGGTCAGgaGCTGGCGGAGTTGTTAGATGAAGAGAAGTTGAGTGGCGTTCCCGTGCTGATCTTTGCAAACAAGCAGGACCTTCTGACAGCCGCCCCGGCCTCCGAGATCGCAGAGGGTCTCAATCTGCACACCATCCGGGATCGCATGTGGCAGATCCAGTCCTGCTCTGCCCTCACTGGGGAGGGGATTCAGGAGGGCATGAATTGGGTGTGCAAGAGCGTCAACTCCAAGAAAAAATAGCTTCACTTCTAGTCTTCTGCTACTCAGGAGGAACAGCAGCAGCACCTACACTGACACACATTTCACCCTCCGGAGCCTTAGTACGATGGAATATGCCTGTGAATGTAAACACACTACTAATCCAACATGGACCTGGAGTATTTAACCCCCTTCATTCCTGCATCGCTGATGTTTACTAATCTCAACACATCTTCCTACGTTGGCCTCTACAAAGAGGAGGGCGGTTTGACTTCAAAGGGATCCCATGCCAGGAAATCGACCTCCTCCACCCAGACTACCCACGTCACCATCACTGTCCCAGCCAATCCCAGCCACCATCCACAGCCTATCACAACCTCAAACATTCATTCCCATTAAACTGCGGTCTTTCATTGGAATTCCAGCTTGTTCTTTAAACTCTTTCACACACTGTCCGGgaaacccccaccccccaccccaccctgtCTCATCCATCTTATTCTTACAGGTTGatatgtgttgtttgttttttatcattCCACAATAGCTGTAAGCTCTTTTACTGCTATGGCTCTGTTTGAAGTGAGGtatatttttgtaattgttttatttatggTGAAGTAGAGTGTAGAGTGCTTTCAAACAACAGcaagtgtgatgtgtgtgtgtgatttaaaGGATGTTGGAGAAACCATTCCAACTCCCCTAAAGAATAATGTACATGTTAATATGTATAAAAAAGATGAGATTACATGGTTAAGAGGAACTACATTTTGGATTAAGTGTAAATAGCTCTGCCCTGTGATCATATGTTACGTTATGCACATGTTATAGAGTATATGTTACCCTGCTGTACTTTGTAGTCTATAATGTTTGCATATCTaatatatttagatttttatcaGAGGTATACGTACTGTACGTCCCAATGCATTTCTTTGTGCTCTTTGGGTTTGTGAGGGAATTCACTCTTGCATTTCCTTTTGATATTCTTGAATGTAATCTGTCCAGAATTGAAGGTACTGTATGTGAATaataaaaagacaagaaatccC

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 3

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07944 ARL3; ADP-ribosylation factor-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788499.1 True 1713 mRNA 0.45 6 10240422 10243479

Neighbor

gene id symbol gene type direction distance location
LOC120551219 LOC102301022,LOC101475163,LOC102200806 coding downstream 30171 10176970 ~ 10210251 (-)
LOC120551222 NA coding downstream 112396 10114391 ~ 10128026 (-)
LOC120551225 LOC102301022,LOC102200806,LOC102204770,LOC101474318 coding downstream 132093 10093894 ~ 10108329 (-)
rnf157 rnf157 coding downstream 163435 10053248 ~ 10076987 (-)
LOC120551218 LOC100709573 coding downstream 189027 10042009 ~ 10051395 (-)
LOC120551235 pgs1 coding upstream 56884 10300363 ~ 10322684 (-)
trnal-uag_19 NA coding upstream 99038 10342517 ~ 10342598 (-)
LOC120551217 cdr2,LOC102780218 coding upstream 141898 10385377 ~ 10394268 (-)
LOC120551210 NA coding upstream 166130 10409609 ~ 10415002 (-)
LOC120551205 LOC103371333,LOC102288843,LOC107387740,LOC107089041,LOC100705041,LOC101474026,LOC102207374,LOC108248045,LOC103381519,LOC101170226,LOC103145144,LOC103481524,LOC102233374 coding upstream 197382 10440861 ~ 10488302 (-)
LOC120551240 NA non-coding downstream 22718 10210532 ~ 10217704 (-)
G211235 NA non-coding downstream 76757 10163385 ~ 10163665 (-)
G211229 NA non-coding downstream 98726 10140593 ~ 10141696 (-)
G211214 NA non-coding downstream 150355 10084575 ~ 10090067 (-)
G211225 NA non-coding downstream 156606 10083547 ~ 10083816 (-)
G211440 NA non-coding upstream 14663 10258142 ~ 10361903 (-)
G211464 polr3e non-coding upstream 124142 10367621 ~ 10368221 (-)
G211497 myoz1,LOC103371330,LOC102783790,LOC107387747,LOC103381524 non-coding upstream 312723 10556202 ~ 10560419 (-)
G211508 ldb3 non-coding upstream 447579 10691058 ~ 10701268 (-)
LOC120550884 NA non-coding upstream 563834 10807313 ~ 10810371 (-)
LOC120551227 NA other downstream 68419 10169714 ~ 10172003 (-)
G211113 LOC104923420 other downstream 346009 9887314 ~ 9894413 (-)
G210928 LOC104945051 other downstream 1647358 8589241 ~ 8593064 (-)
LOC120551255 LOC101163528,LOC105932510,LOC103361451,LOC101061764,LOC102786967 other downstream 1955691 8282838 ~ 8284731 (-)
G210761 NA other downstream 2178172 8059323 ~ 8062250 (-)
G211451 LOC104933891,LOC103372658,LOC104967452 other upstream 83188 10326667 ~ 10329408 (-)
sec24c NA other upstream 256774 10500253 ~ 10561402 (-)
prkcea prkce,LOC103370414 other upstream 511573 10755052 ~ 10806087 (-)
mta3 mta3 other upstream 614920 10858399 ~ 10891991 (-)
gch2 LOC103145127,LOC101161367,LOC103373802,LOC107085523,LOC102790074 other upstream 683382 10926861 ~ 10931338 (-)

Expression


Co-expression Network