LOC120551225 (LOC102301022,LOC102200806,LOC102204770,LOC101474318)


Basic Information

Item Value
gene id LOC120551225
gene name LOC102301022,LOC102200806,LOC102204770,LOC101474318
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10093894 ~ 10108329 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039788484.1
ACAACAATTACAAGAAAGTTGAAAATGGAAATCTTAAATCTCAGCTTCCCCCAACAATGCTCTCTGTGTGAGACAGATGTGTGCCAAGAATGTATTTCATAATCGCTGTGTGGTGTTTTTGCTATGAACATTTATGGCACTAATGGTGGACTTATGGTACTTCCTTCTCCTATtaatcacattcacacaaacacatgtattTGTTGGCTTTTTAGGGGCAGCTGAACAAGCTGAAAACAACATCTGACATTATCCCCTCATAATGTTGTTAAAGCTACTTAAGTTTTCATggttttcatgttttcattctCCTGGGAGAAGTCCTGTGTTTCTTTGACCCATCCCATGTGGATTTGGATTAAAAAAGCAGTTAGTAGTAGTCAGATAGTATTTGTGACATTCTGAAAACAAACATAATACAGGACAAAATATGTTTCCCCTTAAAACGAGAAAGCAGTTTAGTGGTACGGGAACGTAATCTTTAGGAGACAGGactacagagcaacattagtaGTCTGGAGTCGTGTTTGTAGCCACCTGAAGAATTtcagtccaatattcactctcttttagctctgtttttggtctccagcAACTCCGAAGAAAAATGTCTGGTCCTTTAGCAgataaatgctccactatgttcaccagctaattGCCAACTTTGTCTCTCTATtgtttgctgctgagcaggtagGTACAGAGAGGTTTTAGAGCTAatttgctgaaaacagctgcctactGAAAGCAACACGGTGAGAGTGAACCGAAACAGTAAAGTTGGGAGCCGGAAATCTAAACTATGAGCTGATACTCACTATAAAGCTCTGTAAAGCCGTGATGAGCTGCAGATTCAgttgataattctctgtaggttcatAAGCGACCGCTTTGCTTTCATATCGTCATTTAATACATTGTTACtataaaaatatgaattaaagCTAAGTTTAACACAATTACAACCACCTAGACATTAGCAATATGCTTGTGAGATTTGACTGCAGAAAGTGTTCTGGTTGTCAactgttttgcattttaaaacacattacgatttgtttttttttacttgtttttgcaGAAGTGATGGCTTCAGTAAAGTTGATCCCAAAGCCAaaagagccactgctccttccAAAACCAGGCGGTGACGGGTGTGTGCGCTGTGCTGTGGTGGGCAATGCAGGGATCCTCAATGGCTCTAAAATGGGGAAAGAGATTGATGCTCATGATTATGTTTTTCGGATGAATGGTGCAATCACCCAAGGTTACGAGGAAGACGTAGGAAACAGAACATCGGTGTACATTCACACGGCCCACTCCATCACATCTGCGCTGTATTTCTTCAAGAAGTTTGGATATACTACTGTCCCTCATGATGAGGGTATAAAATACATTATAGTTCCTGAGGGGATGGGGGATTTCGATTGGCTCAGGGGTCTTCTCAAAGGAGAAAGAATCACTGTTGATCGATATGGAAACATAAGGCCATGGACGTACTATGCTGGGCAGTACAATGAGACCCGCTTCTATGTTCTGCACCAGGACTTCCTGAGATACATTCGAAACAGGTTCTTAAAGTCTCCTAATCTAAATGCTTCATACTGGGCATTAGTCAGACCAAGCAATGGGGCATTCACTCTCTTCCTGGCTCTGCATACCTGCGACACTGTGAATGCATATGGATTCATGACTGAGGACTACAAGAAATACTCAACTTACTACTTtgagaaaaatattaaaacccCTGTCATTCTCTACGCCAACCATGACTATATCCTGGAGAAAAACTTGTGGAAAAAACTGCATGACAGCAAAATAattaagctttatcaaagaacAGAGTCAGAAACAGGGACGAAAAAGCCTAAACAACACTGATACACTGAGAATGGAAGTAAGAGATTCTGcaataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttcacttcacaggtgtgctttgtcagggttaatta
>XM_039788485.1
CTCCTGGGCTTAAAAAGCGAAGGCAAACACTCAGTATTACTCAGTAATAAATTGAGCAGCAAAGCCTCCAGTTCTCAGTCTCAGGGATGGCAGTCCAAACCTCCAGCTGTTTTTCTTTGCTGCTTGTGATCTCAGTTTGTAttgtactttttcttttatcatgGGGCCAATCATCAAGCAGCATCAGCTGGATTACTTTCAAGAATCAGCCCCCTGTTGTGTTTACACATACAGCAAAAAAAGCTGattccacaaaaacaaagctaaaaacTGATCAGATGAGACGCTCTACACTTGGCGCTGTGGTTGAGACTCCCATGCCCGTCCTCTCCAAAACCTCCTTCAAGAAGCTTCCTCACTGGGATTTTGACGATGTTTATAACCAGGATGTTCCACCCAGGCAGACAACATGTGCCCAGTCTCTGCGAAACTCTGAGGTTGAGAGCTTCAAGAAGGCTTTCCTCCCCAACATACGTTTGTTTCTGCACAAAGACAGTATCAACATGAGCGAGTGGAATCGGCTTTCACATTTCAACAATCCTTTTGGTTTTATGGAGTTACAAGTATGATGAAGTGATGGCTTCAGTAAAGTTGATCCCAAAGCCAaaagagccactgctccttccAAAACCAGGCGGTGACGGGTGTGTGCGCTGTGCTGTGGTGGGCAATGCAGGGATCCTCAATGGCTCTAAAATGGGGAAAGAGATTGATGCTCATGATTATGTTTTTCGGATGAATGGTGCAATCACCCAAGGTTACGAGGAAGACGTAGGAAACAGAACATCGGTGTACATTCACACGGCCCACTCCATCACATCTGCGCTGTATTTCTTCAAGAAGTTTGGATATACTACTGTCCCTCATGATGAGGGTATAAAATACATTATAGTTCCTGAGGGGATGGGGGATTTCGATTGGCTCAGGGGTCTTCTCAAAGGAGAAAGAATCACTGTTGATCGATATGGAAACATAAGGCCATGGACGTACTATGCTGGGCAGTACAATGAGACCCGCTTCTATGTTCTGCACCAGGACTTCCTGAGATACATTCGAAACAGGTTCTTAAAGTCTCCTAATCTAAATGCTTCATACTGGGCATTAGTCAGACCAAGCAATGGGGCATTCACTCTCTTCCTGGCTCTGCATACCTGCGACACTGTGAATGCATATGGATTCATGACTGAGGACTACAAGAAATACTCAACTTACTACTTtgagaaaaatattaaaacccCTGTCATTCTCTACGCCAACCATGACTATATCCTGGAGAAAAACTTGTGGAAAAAACTGCATGACAGCAAAATAattaagctttatcaaagaacAGAGTCAGAAACAGGGACGAAAAAGCCTAAACAACACTGATACACTGAGAATGGAAGTAAGAGATTCTGcaataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttcacttcacaggtgtgctttgtcagggttaatt
>XM_039788486.1
CTCCTGGGCTTAAAAAGCGAAGGCAAACACTCAGTATTACTCAGTAATAAATTGAGCAGCAAAGCCTCCAGTTCTCAGTCTCAGGGATGGCAGTCCAAACCTCCAGCTGTTTTTCTTTGCTGCTTGTGATCTCAGTTTGTAttgtactttttcttttatcatgGGGCCAATCATCAAGCAGCATCAGCAAAAAAAGCTGattccacaaaaacaaagctaaaaacTGATCAGATGAGACGCTCTACACTTGGCGCTGTGGTTGAGACTCCCATGCCCGTCCTCTCCAAAACCTCCTTCAAGAAGCTTCCTCACTGGGATTTTGACGATGTTTATAACCAGGATGTTCCACCCAGGCAGACAACATGTGCCCAGTCTCTGCGAAACTCTGAGGTTGAGAGCTTCAAGAAGGCTTTCCTCCCCAACATACGTTTGTTTCTGCACAAAGACAGTATCAACATGAGCGAGTGGAATCGGCTTTCACATTTCAACAATCCTTTTGGTTTTATGGAGTTACAAGTATGATGAAGTGATGGCTTCAGTAAAGTTGATCCCAAAGCCAaaagagccactgctccttccAAAACCAGGCGGTGACGGGTGTGTGCGCTGTGCTGTGGTGGGCAATGCAGGGATCCTCAATGGCTCTAAAATGGGGAAAGAGATTGATGCTCATGATTATGTTTTTCGGATGAATGGTGCAATCACCCAAGGTTACGAGGAAGACGTAGGAAACAGAACATCGGTGTACATTCACACGGCCCACTCCATCACATCTGCGCTGTATTTCTTCAAGAAGTTTGGATATACTACTGTCCCTCATGATGAGGGTATAAAATACATTATAGTTCCTGAGGGGATGGGGGATTTCGATTGGCTCAGGGGTCTTCTCAAAGGAGAAAGAATCACTGTTGATCGATATGGAAACATAAGGCCATGGACGTACTATGCTGGGCAGTACAATGAGACCCGCTTCTATGTTCTGCACCAGGACTTCCTGAGATACATTCGAAACAGGTTCTTAAAGTCTCCTAATCTAAATGCTTCATACTGGGCATTAGTCAGACCAAGCAATGGGGCATTCACTCTCTTCCTGGCTCTGCATACCTGCGACACTGTGAATGCATATGGATTCATGACTGAGGACTACAAGAAATACTCAACTTACTACTTtgagaaaaatattaaaacccCTGTCATTCTCTACGCCAACCATGACTATATCCTGGAGAAAAACTTGTGGAAAAAACTGCATGACAGCAAAATAattaagctttatcaaagaacAGAGTCAGAAACAGGGACGAAAAAGCCTAAACAACACTGATACACTGAGAATGGAAGTAAGAGATTCTGcaataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttcacttcacaggtgtgctttgtcagggttaatt

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039788484.1 True 2010 mRNA 0.40 6 10093894 10107221
XM_039788485.1 False 1499 mRNA 0.44 9 10093895 10108329
XM_039788486.1 False 1452 mRNA 0.44 9 10093895 10108329

Neighbor

gene id symbol gene type direction distance location
rnf157 rnf157 coding downstream 16907 10053248 ~ 10076987 (-)
LOC120551218 LOC100709573 coding downstream 42499 10042009 ~ 10051395 (-)
LOC120551215 NA coding downstream 65046 10021391 ~ 10028848 (-)
LOC120551212 NA coding downstream 86285 9997864 ~ 10007609 (-)
LOC120551213 NA coding downstream 98269 9974695 ~ 9995625 (-)
LOC120551222 NA coding upstream 6062 10114391 ~ 10128026 (-)
LOC120551219 LOC102301022,LOC101475163,LOC102200806 coding upstream 68641 10176970 ~ 10210251 (-)
arl3b arl3,LOC103367836,LOC102778022,LOC102201386,LOC103145158 coding upstream 132093 10240422 ~ 10243479 (-)
LOC120551235 pgs1 coding upstream 192034 10300363 ~ 10322684 (-)
trnal-uag_19 NA coding upstream 234188 10342517 ~ 10342598 (-)
G211214 NA non-coding downstream 3827 10084575 ~ 10090067 (-)
G211225 NA non-coding downstream 10078 10083547 ~ 10083816 (-)
LOC120551239 NA non-coding downstream 11160 10081877 ~ 10082734 (-)
G211213 NA non-coding downstream 13268 10013898 ~ 10080626 (-)
G211219 NA non-coding downstream 84962 10008690 ~ 10008932 (-)
G211229 NA non-coding upstream 32264 10140593 ~ 10141696 (-)
G211235 NA non-coding upstream 55056 10163385 ~ 10163665 (-)
LOC120551240 NA non-coding upstream 102203 10210532 ~ 10217704 (-)
G211440 NA non-coding upstream 149813 10258142 ~ 10361903 (-)
G211464 polr3e non-coding upstream 259292 10367621 ~ 10368221 (-)
G211113 LOC104923420 other downstream 199481 9887314 ~ 9894413 (-)
G210928 LOC104945051 other downstream 1500830 8589241 ~ 8593064 (-)
LOC120551255 LOC101163528,LOC105932510,LOC103361451,LOC101061764,LOC102786967 other downstream 1809163 8282838 ~ 8284731 (-)
G210761 NA other downstream 2031644 8059323 ~ 8062250 (-)
LOC120551330 LOC102192764 other downstream 2298416 7722897 ~ 7795478 (-)
LOC120551227 NA other upstream 61385 10169714 ~ 10172003 (-)
G211451 LOC104933891,LOC103372658,LOC104967452 other upstream 218338 10326667 ~ 10329408 (-)
sec24c NA other upstream 391924 10500253 ~ 10561402 (-)
prkcea prkce,LOC103370414 other upstream 646723 10755052 ~ 10806087 (-)
mta3 mta3 other upstream 750070 10858399 ~ 10891991 (-)

Expression


Co-expression Network