RNA id: TU313057


Basic Information

Item Value
RNA id TU313057
length 1451
lncRNA type inter_gene
GC content 0.53
exon number 8
gene id G230879
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27762876 ~ 27779078 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAATGTTTTCCAGGGAATTCAATTCTTTTATTAGAATTTCAACAATTGTCTAATGACAGGACTTGATAAAACCAGACGGGTGTTTCTACAGAGGAATATTTTCTGTGACTCATGGTAAGCCAAGAGCAAAAGCTCCATCTTTTTCTCCTTgcttgttttctgattttaaataTACATTAGTAGCAGCCCTGTGCTCTGTGTAGAGCAGCAGGAGTAGAGGACATAAATATAGAAAACTGCTGTGCACTCCAAGTTTGGAGGGGGTTCAGATGTGTCAGCTGGAGACTGGGGCTCAGTGGAGGGGGAGAGTTACTCTGTGAGGCCGAGCTTCTTCTTCAGGGACTCTGGCATCTCTGGGGGAGGGGGACGGGGAAGGCGGAAGTAGACCTTGACAGAGTCGTAGATAAACCACTGCAGGGCGGTCAGAGTACCAATCATGATGATACGGGCAACCAGACCCTTCCACACACCTTGGGTCCCAGCTTCTTGAGGACCTGGACAGCAGTGCTGCCCTGCTCCTTGTTCAGCACAGAGACCACAGAGTCAGCAGGGTGGGACACGatggcacagaacacaccagcTATAACCGGCCACAAAGGTGACCACCAGCTGCTCAGGTTTGCTGCACTCACTGCGGGGCTTGGGAACAACATACTTGTAGAGCAACTCCACAGTGCGCTCGAAGCAGGAAAACTTCATCATAGTGTAGGGGATCTGCCTCATCCACAGGGGTACCACACCCTTATAGAAACGCCCAGAGTCCCTCCTCGGCATACATCTTAGGGACACATTGTCTGAGGGTGTTGGCATAGCCCGGCTGGGTCTGGATACGAACTTTAACAGCCTCCATGGGAGCCAGAGCAATATCTGCAAAGAACTCTGCGCTGGCTGAGGCAGCAAGGTACAGTGATGTCCTCCAGAGGTAGGTGTTCTCCTTTTGGCAAGTCACTGTAGAAGATCTTGAACACTTCATAGAAGCCGAACTTGCACAGTCCCTGCATGGAGTAGCCAATGAAGGTGGGAGCCCAGCCCTTTGCCAGGCCTCTGACACCATCTTCCCTCAATGTCACTCTGAAGCCATTGCCGATGCTCTTGAACTTATCTGGGTCCACTGCAGGCGGCACTTGACAAGGTCGAGGGGCACCACTGCTGTATGCGTGATGCCGCAGCTCAGGATACCCCCAAAGCCACACAGGGCATAGTACTTTGAGGAGCCAAACTCGCAGCTGACATCCTCTTGTGCGGTGGCGGCTGCTGCCAGTCTGCGTGTCCTCGGTCCATGAAGGCTTTGTTGGGGTTCTTCCACTTTTTGGAGGCTGAACAGGGGGGCGCTGAACGGGTTGCCCCGGGCCAGCTGTGTCAAAGCGGTCGGGTACATGGTGGTGTCCTGCCTGCTGGCGGAGTCTCTCAGTGTCTTAAGATGGCGCCTCCACTTAGCTGCAACGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313056 lncRNA upstream 2761 27759598 ~ 27760115 (+) True G230878
TU313044 lncRNA upstream 24677 27656020 ~ 27738199 (+) True G230866
TU313052 lncRNA upstream 60239 27699320 ~ 27702637 (+) True LOC120552997
XR_005638074.1 lncRNA upstream 60903 27699063 ~ 27701973 (+) False LOC120552997
TU313030 lncRNA upstream 131833 27628951 ~ 27631043 (+) True G230858
TU313061 lncRNA downstream 278 27779356 ~ 27800032 (+) False G230881
TU313060 lncRNA downstream 19353 27798431 ~ 27800032 (+) True G230881
TU313083 lncRNA downstream 188982 27968060 ~ 27971245 (+) True G230900
TU313090 lncRNA downstream 192857 27971935 ~ 27973192 (+) True G230907
TU313084 lncRNA downstream 194223 27973301 ~ 27974585 (+) True G230901
XM_039791033.1 mRNA upstream 66159 27695624 ~ 27696717 (+) True kiss2
XM_039791032.1 mRNA upstream 111794 27648003 ~ 27651082 (+) True spx
XM_039791030.1 mRNA upstream 117997 27637139 ~ 27644879 (+) False golt1ba
XM_039791439.1 mRNA downstream 70659 27849737 ~ 27959398 (+) True LOC120553234
XM_039791441.1 mRNA downstream 87585 27866663 ~ 27959398 (+) False LOC120553234
XM_039791440.1 mRNA downstream 134634 27913712 ~ 27959398 (+) False LOC120553234
XM_039791037.1 mRNA downstream 237765 28016843 ~ 28023618 (+) True LOC120552999
XM_039792180.1 mRNA downstream 370654 28149732 ~ 28293546 (+) True LOC120553593
TU313012 other upstream 159174 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 690324 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1381767 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 1381767 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1716195 26038287 ~ 26046681 (+) False arhgef39
TU313087 other downstream 162243 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 278653 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 691728 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 692028 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 722156 28501234 ~ 28501419 (+) True LOC120553833

Expression Profile