RNA id: TCONS_00072953


Basic Information

Item Value
RNA id TCONS_00072953
length 1107
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_037067
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 20433812 ~ 20436515 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaattttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagtagttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttttatcatgatctgtatgttgaattaacgtcatgacttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatggcctaaacctgtgtcagactgcagttctgctactccatgccaaggcttttgtatggatgtctgactactactgtgttctctaaaggttttctggaagctccaCTTGAGGGCATCAAGGACATACTGATGGCCTAAACCATGTGTCaacctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCATACTGCTTGTAGTAAACACACATGCTGATCTGATGCGGGAGAGATATAcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttaTGCCTTATCTTGACAATGACCATCTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142293

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075089 lncRNA upstream 380363 20051419 ~ 20053449 (+) False XLOC_037062
TCONS_00075088 lncRNA upstream 380363 20051419 ~ 20053449 (+) False XLOC_037062
TCONS_00074894 lncRNA upstream 380363 20051419 ~ 20053449 (+) True XLOC_037062
TCONS_00072950 lncRNA upstream 610566 19821468 ~ 19823246 (+) True XLOC_037064
TCONS_00075087 lncRNA upstream 623634 19806621 ~ 19810178 (+) True XLOC_037063
TCONS_00072968 lncRNA downstream 427153 20863668 ~ 20869194 (+) False XLOC_037073
TCONS_00075090 lncRNA downstream 427153 20863668 ~ 20871057 (+) False XLOC_037073
TCONS_00072969 lncRNA downstream 430754 20867269 ~ 20871057 (+) False XLOC_037073
TCONS_00075091 lncRNA downstream 765757 21202272 ~ 21205472 (+) False XLOC_037077
TCONS_00075092 lncRNA downstream 766433 21202948 ~ 21205472 (+) False XLOC_037077
TCONS_00072947 mRNA upstream 780354 19623406 ~ 19653458 (+) False XLOC_037061
TCONS_00072948 mRNA upstream 785513 19623480 ~ 19648299 (+) True XLOC_037061
TCONS_00072946 mRNA upstream 787254 19623363 ~ 19646558 (+) False XLOC_037061
TCONS_00072945 mRNA upstream 883754 19529951 ~ 19550058 (+) True XLOC_037060
TCONS_00072944 mRNA upstream 905774 19518674 ~ 19528038 (+) False XLOC_037059
TCONS_00072954 mRNA downstream 47331 20483846 ~ 20502622 (+) False XLOC_037068
TCONS_00072955 mRNA downstream 47336 20483851 ~ 20501710 (+) True XLOC_037068
TCONS_00072956 mRNA downstream 83331 20519846 ~ 20524673 (+) False XLOC_037069
TCONS_00072957 mRNA downstream 83354 20519869 ~ 20523292 (+) True XLOC_037069
TCONS_00072958 mRNA downstream 89957 20526472 ~ 20539280 (+) False XLOC_037070
TCONS_00072952 other upstream 41778 20386745 ~ 20392034 (+) True XLOC_037066
TCONS_00072951 other upstream 592757 19837383 ~ 19841055 (+) True XLOC_037065
TCONS_00072949 other upstream 610198 19821457 ~ 19823614 (+) False XLOC_037064
TCONS_00072913 other upstream 1825543 18605564 ~ 18608269 (+) False XLOC_037047
TCONS_00072967 other downstream 421205 20857720 ~ 20859493 (+) False XLOC_037073
TCONS_00072978 other downstream 768101 21204616 ~ 21204722 (+) True XLOC_037077
TCONS_00072979 other downstream 778425 21214940 ~ 21226132 (+) True XLOC_037078
TCONS_00073005 other downstream 1104338 21540853 ~ 21559785 (+) False XLOC_037087
TCONS_00073007 other downstream 1134918 21571433 ~ 21712146 (+) False XLOC_037087

Expression Profile

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